Detail information of BGIOSGA033262_circ_igg.1


General Information
CircRNA Name BGIOSGA033262_circ_igg.1
ID in PlantcircBase osi_circ_008599
Alias Chr10:21475663_21477641(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18583846-18585824  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033262_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTT
GCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgcagccatggctaaagagtatcctgcct
cccccaaagctcagcagctgcaagaatccaagaagcagcggctcacctacatcctcgtggtgag
cgcgctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGCCATGGCTAAAGAGTATCCTGCCTCCCCCAAAGCTCAGCAGCTGCAAGAATCCAAGAAGC
AGCGGCTCACCTACATCCTCGTGGTGAGCGCGCTCTGCGTCGCCTTCTACGTCCTCGGTGCGTG
GCAGAACACCACAGTGCCCAAGCCGGCGGCGAGCTCGGCGATCACCAAGGTTGGCTGCGACCCG
GCGGCGGCGGGGCAGTCCTCCGCCGTGCCGTCGTTCGGGTCGGCCTCGCAGGAGTCACTCGACT
TCGAGGCGCACCACCAGCTCAGCCTCGACGACACGGACGCCGAGGCGGCGGTGCAGCCGTTCCC
GGCGTGCCCGCTCAACTTCAGCGAGTACACGCCGTGCGAAGACAGGAAGCGCGGCCGGCGGTTC
GAGCGCGCGATGCTGGTGTACCGGGAGCGGCATTGCCCCGGCAAGGACGAGGAGATCCGGTGCC
TCATCCCGGCACCGCCCAAGTACAGGACGCCGTTCAAGTGGCCGCAGAGCAGGGACTTCGCCTG
GTTCAACAACATCCCCCACAAGGAGCTCAGCATCGAGAAGGCCGTGCAGAACTGGATCCAGGTG
GACGGCCAGAGGTTCCGGTTCCCCGGTGGCGGCACCATGTTCCCGCGAGGCGCCGACGCCTACA
TTGACGACATTGGCAAGCTCATCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACGGG
TTGCGGGGTAAGGGGAGAAGATCAGAAGAAACATCTAGCTTCAGGTTTCTTGATGTCGTGGCAA
TGTGCTCATGCTTTTGCATCTTCTTTGCAGGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGA
ACATCCTTGCAATGTCGTTTGCACCGAGGGACACCCATGAAGCTCAGGTGCAATTCGCGCTGGA
GCGGGGTGTGCCGGCCATCATCGGCGTGATGGGAAAGCAACGGCTGCCTTACCCATCTAGGTCA
TTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAATTTGGTGAGCACTTCAATA
CATTTGAATTGGTTTCAATGTATCTTGCCCCAAGTTTTCAAGCTATCCTTAGGTCAAAATATTG
TTCACTAATTGAGTTGGATGTTCTGAATTTTTTGTTAGATGGAATATACCTAGCTGAAGTCGAC
AGAATTCTAAGGCCCGGGGGATACTGGATTCTCTCGGGTCCTCCGATCAATTGGAAGACACACT
ACAAGGGGTGGGAGAGGACTAAGGAAGACCTCAAGGAAGAGCAAGAAAATATTGAGGATGTCGC
GAGGAGCCTTTGCTGGAACAAGGTGGTTGAGAAGGGGGATCTCTCCATCTGGCAAAAGCCTAAG
AACCACCTTGAATGTGCCAACATCAAGAAGAAGTATAAGACACCCCATATATGCAAGAGTGACA
ATCCTGATGCTGCCTGGTATGGAATCGCTGCACCAACAAGACTATCTGATAATTCATTTAGATG
TCTGCCACTGAATTAGTTTCTTTTACCCCTTCATGTGAACAGGTACAAGCAGATGGAAGCATGT
GTTACTCCATTGCCTGAAGTAAGCAACCAGGGTGAGATCGCAGGTGGAGCTTTGGAGAGATGGC
CACAGAGGGCATTCGCGGTCCCTCCAAGGGTGAAGAGGGGTATGATTCCAGGGATAGATGCGAG
TAAATTTGAGGATGACAAGAAGTTGTGGGAAAAGAGGGTGGCGTACTACAAGCGCACCCTACCC
ATAGCCGATGGGAGATACAGAAATGTCATGGACATGAACGCAAACTTGGGCGGATTTGCTGCTT
CTTTAGTGAAGTACCCTGTGTGGGTGATGAACGTCGTTCCTGTAAATTCAGACCGGGACACGCT
TGGAGCAATTTATGAGCGAGGATTCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACG
TATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021