Detail information of Niben101Scf03253g02010_circ_g.1


General Information
CircRNA Name Niben101Scf03253g02010_circ_g.1
ID in PlantcircBase nbe_circ_001172
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf03253: 302103-306782  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   ei-circRNA
Identification method DCC
Parent gene Niben101Scf03253g02010
Parent gene annotation NA
Parent gene strand -
Alternative splicing Niben101Scf03253g02010_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   AC-TC
Number of exons covered Niben101Scf03253g02010.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACACCAACCAAATTTTAAAAGACTGGCGTTCACAGTCATGAAACTCTTATAATTAATCAAAG
ACTGACCTAAAACAAGCATCACGGGTGGCGATTACTcaaatgatcttcatctatcctcctccaa
tagttcttagtctacaagaatagctcaacaatataaccaatcactaataagaaaacatcgctat
gttaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAATGATCTTCATCTATCCTCCTCCAATAGTTCTTAGTCTACAAGAATAGCTCAACAATATAA
CCAATCACTAATAAGAAAACATCGCTATGTTAAATATGTTGCCCAGTAAACAGAACCTAAATGT
TACAAAGTGAATTAAATATATTGTTCGGGTCAATGCAACCTGTAGGAGGAGTCAAAAGCTGTAC
TAGTAGAACTAATTGTTGTCATCAAGTGGTAGAGGTTGAAGTTGAACATAGCTCCAGACTTTGA
AAATGGTTAGCTCACTGTGTTGTGACACTTTTGGCAAGATTACGAGGTTGATCAACATTGTATC
CACGCAGTACAGTCAAATGATAGGCCAATAACTGCGCAGGACAAAGACGACAAACACAAGAGAA
TAAGTAAGCTGGTTGTAAAACCTCAAACAGAAAAAGCTTACAGTCTGCATATTACTGGAGCAAA
AGAAAAGCTGTTGCGCAGCAACTATCATGACAATAACAACAACCCAATATAATCCCACTTAGTA
GGGTCTAGGGAGGGTAGTGTATACGCAGAGATTACCCCTATCCTGGGGTAGAAAGACTGTTTCT
AAATAGAGCCTCGGCATCCTTCCCTCCAAGAACTTCCCACCTTTCTCTTGGGAAGACTCGAACT
CACAACCTCTTGGCCACTAAATGATCAATGCATCGAGTGAAGGGAAAAAAAAAGGTGGTGAGGG
GGTTGAACTTAGCAGAAGATGAAAAATGCATGTTATGGTATAAGCTATGCCAGTGTATCATATT
GCAGATGATCTTAAGTGGTTCTGGCCCCTAGCAGGATTTCACAAAATAACACTAAATTTACGTG
ATATGAAGCTGTGACCAAGTAAGCGGCGAAGATTGAGAGAAATTTTGCCTATTTATGACATTCA
GTGGTTTAAAGGTAGAAACCAGAGCAAGTAGAGGATTAACACAGAGAGAGAGACAGAAAGAGAG
GGGAAAGAGATGAGAGCAAATTCTGTACAGCTGCCAATCTAGTGTGGCAAAATAATACACATGG
TATTAGAACTTAGAAACCACAAAGTGGAAAATTTATGATCTTCGCACCTTAGTTTCGGTACAAA
CGCTTTAATGTTTATATTGAAGAGACCTGATAAGTTCTCATGGTTTTGAACCATTACCTGATAA
GTTCTCATGGTTTGAATCATTGGAGATGTGATCAAACCAACTCAAAAGAATTTCAAACTACTAC
GTAATTCACGTAGATGCTATTTCCAGTTGAATGAATACTCAACTTTACACGGTAAAGTTAGATA
AGTGCTCACTTATTTGACTTTACTGCACACTTATAACTTCCTTTTTAGGCTAAAATAATGTAAT
AGGAACAAAAAGAACCCCACTTTAAGGAATTCAAATTTATGGTCTTAGTTTAAAGGTATATCGA
GATATAGGCATCCTTAGCTAGCATCTTGAACCAGTTATTATGGCCATATTGTATTCTTTTCATT
TTATTCAGTGGCCGAGGCACGGGCACATAGAGGTAGTTTTACTTTTGTTTGTTGGAAAATGACA
TTTTACAAACATGCATCAATTTTAAGGAGGCTTCCCACCTTGCTCTTGGGGATTATATAAGCTG
GATATAGAGAAGGCTTATGATCATCAGAACTGGATGTACCTGCTACAAATTCTAAGGAGGATGG
GATTTGGAGGGAGGTGGATTAGATGGATATCATACTGCATTTCTACTGTAAGCTTCTCAATCCT
TATTAACGGAGTTCCAGCGGGATTTTTTCCTTCTCAGAGGGGGCTTAGACAAGGAGACCCTCTC
TCCCCTTTTCTATTTATCTTGGCAGCTGAAGAAAGCACAGACAAACAGCTGGATAAGGGGATTT
AAAATGACCAATAGAACAGATAGCAATGGAAGGATTTCTCACTTACAATATGCAAATGATACCT
TGGTATTCTGTGAAGCAGAAAGAGAGCAAATGAAAGTCCTAAGAGTGATATTCATCCTGTTTGA
AGCCACTTCTGGATTGCACATCAATTGGCAAAAAAGCCTTATCTATCCAGTAAATGATGTAATG
GAAATACAGAGTCTGGCAAATATTTTTTTGGGGGAGGGGAGGGGAGGTGGGGGTTCTGCCAACT
ATATACTTGGGGATGCCTCTGGGAGCCAAGAGCAAATCAAAAGGAATATGGAATAATGTGTTGG
AAAAATGTGAAAAGAAATTGTCAAACTTGAAAAACCAGTATCTATCAATGGGAGGAAGGCTGAT
TTTGATAAATTCTATTTTGGATGCCATGCCTACATACATGATATCTTTATTTCCAATGCCAGCT
AGGGTAGTGAACAGAATTGATGCTCTTAGAAGAAACTTTCTATGGGAAGGTAAATGTGACAAAA
AGAAGCTTCACCTGGTTAAGTGGGGTGATCTAATTTCAAGCAAAAAATCAGGGGGGTTAGGGAT
CAAAAATCTGAAAATACAGAATCAAAGTCTGATGTTGAAGTTGTTATGGAAATTTGCAGTAGAT
GAGCAATCTCTATGGATAGAAGTGATCACGGAAAAATATGGAAAGGAAGGAAGCTGGACAACCA
AAATAGTAAAAAGACCATATGGAGTCAGTCTGTGGAGATTAATTAGGAATTTATGGCCAAAACT
AATCAACAAGGCAAAGTTCAAAGTCGGCAATGGTAGAAAGATTTTATTTTGGGAGGACAATTGG
CTAGGCCAAGGATCTCTGAAGGGACTATTCCCGGATATGTTCAATTTGTGTCAACAACAGAATG
CTACTATAGAAGAGGTGTGGTCAAACCAAGGCTGGAATCTCACATTAAGAAGGCTGTTAAATGA
TTGGGAGATTGGCAGAGTTAAGGAATTGTACAGTTCTCTGCAGCAATTCAGTAGCATCAGCTCA
AACCAAGATCAAGACATGATCAAATGGCAAGGCAATAGTCAAGGGAAGTTCTCAGTTAAAAATG
CTTACAAGGAGGTCAATCAGTCCAATAATCAGGTGGAATGTTGGCCATGGAAGATGATTTGGAA
AGTAAAAATACCACATAAAGTGGCATGCTTCACATGGCTACTGGCAAGAGAAGCAGTTCTAACT
CATGACAATCTAACTAGAAGAGGTTTCCAATTGTGCTCCAAATGTTATCTATGTGGAGAGGAGG
CAGAGACAATTCACCATCTTTTTTCGCATTGCAAGTTCACCATTCAGATATGGAGAATCTTCAT
CAGTCTGAGGGGAATTCAATGGGCAATGCCAGGAAGAGTCCTTGATATTCTGGCAAGTTGGAGT
AAAATGGGCACACCTTGTAGAAAAAGAGAGAGATGGAGGATTGTCCCAGCATGCATATGGTGGA
CACTTTGGAATCAAAGATACTTTGAAGATAAGTCTAGCATCATTCAAAAGATTAAGATGAAATG
TCTAGTTCTTTTTTATTTTTGGTGTAAAGGTCAGCTTTTGGAGGACCATGAACCCCTTTTAGAT
GTTTTAGAGTCCTTATAAGAAGAAGGAGGACTAGGAGTGCATACTTTTTGTAATTATGGGGGAC
TTCACAATTTTAGTGAAGTCTTATATTAACATACAACTATGTTACCTTTTTCAAAAAAAAAACA
TGCATCAATTTTGTTATTGAAAATAGGACTACAGTAACCTAATAAAAGATGTCCAAGGAGTGCC
ACAGATTGAACATGTAAAATAAGAGGCAGCCATATCGCAGGTCATATGCATTAATGAAAATCAT
CACCCAGCCATCAAAGGAATAGGAAATTTATGTTACGAATCCAATAAACAAAACATGACGATTT
CTCAATTACCCTATTTGTTAATTTATATTTGATTCGCATTGACAAAATGTTAACAAAAAATTGA
CACACTGGGCTTCCCCTCTTTAAGGGAATTGCAGCTTTAACTTTATACTAAATCGTGTGAACAG
ACACATCTAAAAGCTTAAGTTATTAGAGAGTTGACAGAACTATTTATCTATTCTAGGTCTGCAA
CAAGTCCCTTGCGTCCATGATTAATTCTTTTTTAGGCCAAGCGTGTGGAAATATTTCGTAAATG
GCGGTGGAGAACCCCAAACATCCTCTATCTGCTCTGGTATCATTTTAAATTGTGTGAACAGCCT
CCATTAAAAGCTTAAATTGTTAGAGAGTTTGCCCATATATTTATTAATTCTGGGTCTGCAAAAG
CTTTTGTATCATGAGAAAACAAACTTTTTCCAGACTACCACTTTTTCCACGAACTTACCCTAAT
GCACACACAGATCCAAGATAAAATAAATTCTACACAGAAAGTGCTAGATAGAAACAGCACATGT
ATTCGCAAAAAAAAAATGTTTAGGACTAAAAAGAATGCCGATACTGTATAGTTGCCACCCAATA
GTCACTAAAAGTTTATATTTCACTGAATTATGAGCCTAAGCAGAGTAGAAACATTACCTGTAAC
GGTACTACATTGATTACCGGCTGCAAACAGTCCGCAACCTGTGGAACTTCAATTACTCGACATG
ATCCACCAACAGAAACAGATGATGCATCTCCTTCTGTGCACATCACTATCAGTCGACCTTTCCG
TGCGTGAAGTTGTTGAATGACTGATTGTTGTTTGCTGCACACCAACCAAATTTTAAAAGACTGG
CGTTCACAGTCATGAAACTCTTATAATTAATCAAAGACTGACCTAAAACAAGCATCACGGGTGG
CGATTACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019