Detail information of POPTR_0004s16310_circ_g.1


General Information
CircRNA Name POPTR_0004s16310_circ_g.1
ID in PlantcircBase pop_circ_001345
Alias Chr04:17748765|17748926
Organism Populus trichocarpa
Position chr4: 16777070-16777231  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method find_circ
Parent gene POPTR_0004s16310
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues stem cambium
Exon boundary   No-No
Splicing signals   AG-GG
Number of exons covered POPTR_0004s16310.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTGAATCCATCAGTCGTGCTGGCCTGGAGAGAATTGGCTTCTCATCTTGGTCAGAATACTTG
ATGCCTGACACGGTCAAaggggttgtttgcttcaagatggctgagatgtaccctgacttggttg
agtcaatggtggtcggctgcacagttatggccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGGGTTGTTTGCTTCAAGATGGCTGAGATGTACCCTGACTTGGTTGAGTCAATGGTGGTCGGC
TGCACAGTTATGGCCATGACTGAATCCATCAGTCGTGCTGGCCTGGAGAGAATTGGCTTCTCAT
CTTGGTCAGAATACTTGATGCCTGACACGGTCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.103909465
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020