Detail information of BGIOSGA034110_circ_ig.3


General Information
CircRNA Name BGIOSGA034110_circ_ig.3
ID in PlantcircBase osi_circ_008951
Alias Chr11:11945291_11947618(MH63RS2), Chr11:11638417_11640728(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10121251-10122394  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGCATGATGTAGTTTAAATAATAATAGCATGATGTAGTTTATATGATGACTAGGACAGTGGC
ACGGTTCCTTGCGAGACATTTTTTCCTCTTTTGAAAgctatgtgtttgtggaattgcttccttg
gcagcagctgtggaagagtaagaaaggagagggagttcagggcagagctgcctctatccaccgc
agcggtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTATGTGTTTGTGGAATTGCTTCCTTGGCAGCAGCTGTGGAAGAGTAAGAAAGGAGAGGGAGT
TCAGGGCAGAGCTGCCTCTATCCACCGCAGCGGTACTTCCAGCAAATCATGGACCAGCGGTTGG
TTTCACGTTGTGCCTCCACACTTGCACGTCCACCTTCAAATCCAAGAAGGCCTCCACAATTGAC
AAGGTGCATGTGCTTTCCTCTTGTTGCTTTCTTCATGCTTGCTTCATTGTATAAATTTGACCAA
AATTTTATTTGTGAATGCATAAGAACAAAACACTATAGGGTTGTGTTCATTCAATTGCAAATAC
GCCCACCTAAAATGTTCTTGGAAGTGGTTTGGCTCTAAATCTGTCATGGACTAATGTGCTTTTG
GTCAGCAAAGGATGAGAACCCATATTTGTAGACATCAGGAAATTTAAAACAACAAATGGATTTT
CCAATGTTCTTTTTTCTTAAATATGCCCGTTAATATATGGAGTGTTTATTGATGGGGTTGTAGA
GTCTATTTGTAATAAAATCTGTTGCTAGCCTGACAGTTATGCACTCTTCTCCCTTCTCTTGGCA
GTAAATCATTTCCCTATCACTTACCCTGCACTCCACATGTTTGTTGTATTGCATCTTAGGACAA
AGAGCAGCCTGAAGAAAAGGGAACAATGGCAATCTGCAAAAGATTTATAGCCCTTCATCTGGAA
CCTATGTCCCCCCCCCCCCCCCCAAACTATTGAGTACTATTTTTTACCTCGGCCTCCCTTAATT
CAAGGTAAAATTGAAAATATCATTCGAAGGTTTGTAAAGTACTTTGTATTTGGCGTTTGAATCC
TACATGGTTGCACAATTTCTGTACACTATCTCTTAATTTTGAGGAAAAGTTAGTAATTATTTTT
AAGACAAGCTAGCTATATGAAGTTTTTAAGATATAACCTCTATTATTAGCTGTTGGTTCTCTCT
GGTAAAACAAGTATGCAGTTAATCAATCTGCCCGTTGCGACCTTAAAGCAAAAGCTTTGCTTAC
CTATCCTTGCTTTTCTACAAGTGGCATGATGTAGTTTAAATAATAATAGCATGATGTAGTTTAT
ATGATGACTAGGACAGTGGCACGGTTCCTTGCGAGACATTTTTTCCTCTTTTGAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021