Detail information of PGSC0003DMG400014366_circ_ag.1


General Information
CircRNA Name PGSC0003DMG400014366_circ_ag.1
ID in PlantcircBase stu_circ_000433
Alias chr03:42797875|42808893
Organism Solanum tuberosum
Position chr3: 42797876-42802612  JBrowse»
Reference genome 3.0.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   CT-GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATATCCTAACAAGAAATCCCTAGATTTGGTGAACAGAGCTCCAATTCAAAGTACAATTGGAAT
CTTATTTCATGTGACCTAGCTTTTGTTATAAGTATCatgtaggtttatggttagaagaaataaa
gcttggtagctatcgtcaaattttcaaagaaaatggtgttatttggaggagatgtccatgttca
ctactgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTAGGTTTATGGTTAGAAGAAATAAAGCTTGGTAGCTATCGTCAAATTTTCAAAGAAAATGG
TGTTATTTGGAGGAGATGTCCATGTTCACTACTGAACAGATTCTCCGGTTTATAAGAAGGTGCC
ACATGAAATGGGGAGACTTCATTACGTTGTGCCTCACAGATGAAACCATATCTCTTAGTTTGAC
AACTTTCTTTGTCCATCTTTCCAGCAATATGATTACGTTTTGTTATGTTGTTTTTAATCAGCTT
TGATTGGTGACTCACTCATGTTTTCTTTGTCATGTGAAAAAACCCTTTTGCAAAACTTGAAGTT
GGGACTAATTCACTTTCCAATAGGTGTGATGGTTCCATCGCGCTGCCTCTACCTACTGTTGACA
TTCTCTAAAACTATCTACCTTAGTAAATCTTAACAAATTTGTAAATTGTTGCTAGTGAGATACT
TCTTTTTTTGTGTTAATTGGTAGAGTGTTGGCCATGTGACCAGGAGGTCCGACGTCACGGGTTC
GAGATGTGGAAACAACCTTGAAGAAATGTTGGGTAAGGCTGTGTACAATAGATCATTGTGGTCT
GGCCCTTTCCCGGACCCCAAGCATAGCAGGAGCTTAGTGCACCGGGCAACCATTATAACAAAAA
GCTATTGAAATACTTCAGTGTATCTGCTGTTGCTATTTCGGAATGAAGTTACTGCTATTCTTTT
ACTATTTGCTAATGTCCTATAGTTCTTGTTATCTATATTGACTCAATTCATGTCTTCAGTGGCT
TGCTTGAAGGGAGAGCAAAGAGTCTGGTGACCATGGTGGGCAGGGGCGGACCCACGTTGGTTCA
GGGGGTTCACCCGAACCCCCTCGGCAAAAAATTACACTGTATGGATAAGGTAATTTTCTGTATT
TATGTGGATATATATATTTTGAACCTCCTTAATGAAAAGGAGAAAGAGATAGCCCAGTGGCAAG
TTCCTTGAAAATTAAGTCTTATGTTGAGGGTTCGAATCCCTGCATTAGCGTTTTATTTTTTTCT
TTTTCCGTTTTCACGTTTTTTATAGTTTTTTTTTTATAAAACATGCTAAAAGTGTGGTCTTAAA
CCCAAAAAAATTCAAGAGTCCGCCTCTAAAACTAAATACTACAACTTTCTTGAAATTTTGTTTT
GTTGGCTTATATATACACGTTTATACTTTTATTTTTCGAACCCCCTGAACGAAAATTCTGGGTC
CGCCACTGATGGTGGGCCCCGTCTTGTATCTCCGCAATGTTTATGAAGTGTAACAGGTAGTGTA
GAGTGGTTTCACTGAAGCTGGAACCTTAGACAATGATTACGCCATTACGCCATCTGTGCGCATT
ATTAGTTATAATATATCCAGAAGAGGATAGAAGTGGAAAATCGCTCCCCGTCGGTTATTTCCCT
TGTAATTTTCCCCCCTCTTCTACCCCAAGACTTTTATGTATTGTAGTCTTTACTTTTAGTTTGT
GATGTCTATAGTATCAAATCAAGAAAATAGATGACTCTTGAGTAAATTTCAAGTTTCTAAACTT
GAATTGTAAGTTTAGCACTAGACAATCACCTGCCTGCCAGATTAAATGTATGTGAATCCACTCA
ATCTTGTGGGAATATTCATGGTGATTTTTTCAGTATTTTCTATCCGCATCCTTTTCTTGAACCT
TGTACATTTAAGAAAGTTTTACAGGCGGATGGCTTCATAATAATCTCCAAAATTGTCTGATCGG
AGCTCTGAAGAATTCTTCATTTTCCTCGCGAAATAAAATGGCTAGGTCTGTCTTTGCAGAGACC
ATAATCTTGGTGTGTGTCATAATATCTGCAAGAATCAACTAATGATGCAGAGGGATGATGCTGG
TGAATAGAACCATGTTGTTTGGAACCATATCAATATAAGGAGGCTTTGACATATCTGGACGCAA
TGTGAACCACCCTTAGTACTTCATTCTCCTTGAAATGTTTCCAAGACTGCACGTTAAATTAATA
AGATAATGTCAAACACAAAATTCTGTCAAAAATAGAAATATAAAATGACCTGATTGTGTAACTA
CGTCAACAAGTAAATGCAAATGTTGAGGGGAAATTACCATGGTTACAAGGGTGTCTAGAGTGTC
ATCCGCTGGAATTTTGTTGAACTCCCATCCGCTTACTATTTCCAGGATAAGAGTGGTAACATGT
ATCTGCTGCAGGTACTCCAGAGCGTTTGAGAATCATATAGGTGTTGAAATCTCTTCGTTTTTCC
TCTCTAAAATGGACAATCCTCCGTTGAGAATTGTACTAATTTCTTGCTGGCCAACCTTATCCTC
CAACAAATTTGAATTTTGAATTCAAAGTCTTTCAATTTCCATCCTGTTGGAGGGGTTGGTTTTT
CAGCAGTCCACTCACTCAAAAAGAATTCTCTCTTCAGAATATCACTCTTTCTAAATCCAAAGTT
TCAGAAGAGTACTGTTCAAGATTTCACTTGAGTTTCCTGGTTTCGCTTCTCGTATTGGAAATCA
AGGGTCATGGAAAGCTCTCATGGCTCGTTGTCTCAGTTCCCTACCCTCTAAAAGGTAATACTCA
TTTCGGCTCATGAATCTTTGTTCCTAATGTGTTGGCATGTTCGATTCTCAACTGTATGAAGCGT
TTAAGTGTGTGGATGTTGGAAATGTATTTCTAACTGATTTCACGACCTTAACTTGTTACTGTTC
TTATTTTCTGGCCTTCATAGCTGCAACATGTTTGGTTTCGAACTCTTCTGTTTATATTAGTTTG
TTTTAGATTATTATTCCAGTTCTTGTTTGCTTTCGAAAGCGTTACCTGCTGCTCTCTTCTGATT
GATCTGCCTTCAGCTTTCTAACATGTCGTAATAAACTCGTATGAGGCTGCTTGGGTTGAATTGT
TTTCGGGTTTAAGTGAATGATAAGCCTCTAAGTTAGTTGTTGGTTTCTTTATTAGAAAAATCAT
GCATTTAGATTGGTTGTTCACCTCTGACATAGTCACTGTTTAACTGTCGTTATTCGAATGAGCT
GCTTAGCCTTTCTTTCTGCTGATCTGAATGATATATGGTGTGTGCTTAATTTTAATCCATTTCT
ACACTTGTTTAGTGCTCAAAGCTTAACTATTTACTCCCCAATAGTATTGACACAAACATACCAG
AAAGATTACTGAAACAAACCATTCATCATTTGATTGATTACAAAATTACATAAGGAGTAATGTT
TTAGATCCATTTGAAGAAAATTAACCATATCATATTATAGAAATAATATTCGATGAGGACTTGC
GTGATCTACGTTGGTTTGATAATTATAACAACTAATTTGATTATATTTTGTCCAATTATATGAA
AATAAGTAACTAACTGTAATTATTTAAATTAAAAACGTAAAAAGTAACCTAACAAACAGAATTA
GAATAAATAATATGTATGACTCAATACGGAGTTGGTGTTACCCAAGTTGGAGGACAAAAACGAC
TCAGGGAAACATCGTTGTAATGCGGCTGGATGCTGCCATCTGCTAAGTTGAACACCCCCATGTC
CAAGCCTCCTCCTTCTTCATAGGACATGTATGTTTCATAAAAATCATCTGTAAAATAAATATGA
TTGGGCTTGATTCCTGGATATCGAGAAGCTTGGACTGAAAGAGAAGCATTAGCACCTAGAAAAA
AAGCTGCGTCCCCTAATTCCTTGGTTTCCGTCATTTTGGAAGCAGCTAAATCAACCCGGGAAAC
TCGAAAATATCTTGTGCCATATGTTACCTCCACCCCAACGTGATAAGGTCTTGGAACGAGCGTT
AATGGAATCATGTCCCAATCATCTTGGACAAGCCTAAAGTGAACACCATATCGCACAACTACAA
ATAATGATCCTAGTGATTCTAGGATGTATAAGTGCTCTGGAATATGTTCATGAGGTTGAGATGG
TATGATATGACATTTAGTAAGTTTAGGGCTAACAACATCAGCAACATTACAAACTAGGAGATTA
CCCGAATAATCCACGGCATAAATTTGGCCATTAAAATATATCAAATCAGCAAAAGAACTGTAAT
TGATTCCTTCCCATGTAACTCTAGTCCATCTAATATCTCCAGGTCTCCAAAAACTGAGGAACCT
CGAGCCTCCATCAATGACCATGAGAAGGTAGTTGGATGTGTGAGAAGGACTAGCTGACAAAACT
GCCTTGCCAATAAAGCAAGTCAGTGAGCCAGTCTGATGTTCATTGTACTCTACTGTGGTATTTT
GATGGGGCAATTCAATCTGAACATCAGAGAAGGGATGTAGCAGACTAATTTCACCCTCTTCTCC
TACCGTGATAAGCCAACCCATAGACTCCAAACATCGTTTTCTGCTAGCTTTGGGAATCCTCTTG
TTCAAAATCATGCCATTATAGAGGCTGAAGAATTTCCGAACCTCATTATCCTCTTCCTCCGCTA
GCATCAGCCAAGGAGCTCTACACAGGTCATTGTTAAAATTGGCCTTGGTGGCCACAGAGTGCCA
GGATTTGCAGACACACCCAAAATTTAGGTAGTCTTCAATCAGATTCAAACATCTACCTATCGAA
ACCAACATATCAAGTGGCAATTTCGACCAATCAGCCATCTTTTGCGCCATCGGCAAATCTATCT
CAACTGTTCCGATCCCAGCCGCCTTATATAATATCCTAACAAGAAATCCCTAGATTTGGTGAAC
AGAGCTCCAATTCAAAGTACAATTGGAATCTTATTTCATGTGACCTAGCTTTTGTTATAAGTAT
C
Conservation Information
Conserved circRNAs NA
PMCS 0.111550788
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018