Detail information of AT2G27140_circ_g.2


General Information
CircRNA Name AT2G27140_circ_g.2
ID in PlantcircBase ath_circ_015141
Alias 2:11598573-11598821
Organism Arabidpsis thaliana
Position chr2: 11598573-11598821  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G27140
Parent gene annotation At2g27140
Parent gene strand -
Alternative splicing AT2G27140_circ_g.1 AT2G27140_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G27140.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTAGTTCCGTTTCATTCTCTCTTGTTTCCTTTGGTGGTTGGACCTTTTCTTTCGCTGACGGGC
TAGGAAGGTTGGGGTTTTCTTTAGGAACTGGAGGAGccgtaagtgctgttctgttattcttcat
cagtgccacatatcctccaagattctccttgtattcattcactttacttctgtaatcttggtta
agagcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGTAAGTGCTGTTCTGTTATTCTTCATCAGTGCCACATATCCTCCAAGATTCTCCTTGTATTC
ATTCACTTTACTTCTGTAATCTTGGTTAAGAGCTTCTTCGTTCTCTCTTGCTGGCTTTGGTGAT
TGAATCTTCTCGGCCTGTTTTTCTAGTTCCGTTTCATTCTCTCTTGTTTCCTTTGGTGGTTGGA
CCTTTTCTTTCGCTGACGGGCTAGGAAGGTTGGGGTTTTCTTTAGGAACTGGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.219545102
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020