Detail information of PGSC0003DMG400032167_circ_g.1


General Information
CircRNA Name PGSC0003DMG400032167_circ_g.1
ID in PlantcircBase stu_circ_000014
Alias chr01:1125414|1130412
Organism Solanum tuberosum
Position chr1: 1125415-1130412  JBrowse»
Reference genome 3.0.38
Type   ue-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400032167
Parent gene annotation Conserved gene of unknown function
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered PGSC0003DMT400081946:1
PGSC0003DMT400081943:2
PGSC0003DMT400081947:1
PGSC0003DMT400081944:4
PGSC0003DMT400081948:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCCGTGTAATAAGAGGAGAGGAGGTGTATTACCTTCTTAGAGGTCTTCTTCTCTCTCACTT
CATACCTTTCTTGGCACAAATCTTGCAACCATGTACagaatggttctttgtgtcaacttagccc
ttttcttaggcctttgaggaagcttgcaacctttcattgccataaaatcttcttctttttcttt
acttgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAATGGTTCTTTGTGTCAACTTAGCCCTTTTCTTAGGCCTTTGAGGAAGCTTGCAACCTTTCA
TTGCCATAAAATCTTCTTCTTTTTCTTTACTTGACAATGTGATCACCAATTTTGGCCAAACCAT
CTTTTTCTTTTCCTCCCTTGCTTCCATGAACAGCTTGCTACTATCGTCCACGCCTACCGACCCT
CTCGTCGTATAATACCGGTCCTCCTTCTCAGGGGATGACACTGATATCTTACGATGCTCATTTG
CGTTAGAACTATTCACACCCAAATCCCTGACAAAACAAGAACCACTAAATTTTAGTACTACAAT
CGTTTACTTTTCAGGCAACCAAATCGAAGATTTTTACCATTTTAAGACTTTGTGCTCAAAAGGT
AAAATACTACAACATGAAATACCTCTAAACCCTTACAAAAACTAAGAAAATCAGCAAATCAATG
ACTGAAATTGTAGTACAACCATCATTTACTTTTCAAGTAACCAAATCGATGAATTTTTCCGTTT
TAAGACTTGGAATCTTCAGCAAACAGCAATATTGTTCTCAAAAGGTAAAACACGACAAAAGGAA
ATACCTCTAGTCCCTTGCAAAAACTAAGAAAATCAGCAAATCAATAACTGAAACTGTAGTACTA
CAATCTTTTACATTTCAGGTAACCAAATCGATGAATTTTTCCGTTTTAAGACTTGGAATCTTCA
ATAAACAGCAATATTGTGCTCAAAAGGGAAAACACCACAACAGGAAAACTGGTATATGAGGTTG
AAAAACTGGTAGAGAACCACAATTCAGCACAAGATATATTAAATGATGAATTGGATGGCATGGA
TGGATTGGATATGCCGGACTGAAATTTGAAGTAATAGCTTCACCAGAAACAATCTGGTTCATTC
TCAAGTATAATTACCAGCTCCAAAACAACCAATCTTCACATCTAATGTGTTTACAAACCAATCT
CAACCAAACCTAAAGTCGAAAACTTTGAACTTCCTTTCCTTCTAATGTACATATAACACATCAA
ATCGTCGCATAATTCAGGACAAATACACCTCAATTTGATACACAAAAAACCAACAAATCAATTT
TCCATACAATGGACTTACCATAACCCCAAAACACAATCAAAGAATGAATCTTTACATCAAAATC
TTGATATATACAACAAATCTCAACCAAACAGCATCTAAAGAAACCAAAAGTAGTCATAATTTGA
CATAAAAATCAATTCTTTAACACAAATGAGGCATTTTTTCCACTCAAATCTTCACTCTTTAAGT
TTTCTTAACAATAAAAAATATGATTTTTTTTGGTTACCTGTTAAGCCTATGAGGAGAAGACACA
TGAAGAGGAAGATGACCAGATTCCTTGTTATTATCAACAACTCTAGATGTAATTTTCTTCTTCA
CCACAAGACTTCTTCCTCCATCAGATTTCCCATTTGAAGTTGAATCTTTCACCTTAAAACACCT
AAGTCTTTTTCTGTTTCCCCACTGTAATTTATCCATATCTACAACAACCCCACAAAATCAAATT
CAGATATTAACAAGAAATTGAACAAAAAAACTAGATTTTGAAACAGTAAAAAGACTGACCTCAA
GATCTATGGGTTAGATACTGATACTCCCAGCCAGATTTTATCAAAAAACTCTGCAACAACATAA
AAAAATAATCAAATTCCATTAACAAAAACTGGAAAAACACATAAAGATTGAAACAAACAAACAA
AAGATAGTAAATTTACAAAGAGATCATCTTTTCTTCTTTTCCTTCTCCTTCTTCTTTAGCCTTA
GTGACTATCAAAAATATGAGATTTTTATTGAAAAATTCAATGAGTTTTCCAATATATATACAAA
GATCATCTCTTTTTCCCCTAAATATGAAATGGGGTTCTTGAATTTTCCTCAAAACAGGTGCACT
TGTCTTCTATACAAGTGTTAAATCTCTGTGTCTTTTTGCTACTCTCTAACCCCCTTTTCTTTTC
CTTCCCACTGTTTTCTGGTTTTTTGTAATTTTCCCTTCTTCTTTTTTCTTTTTTGAGTGGGGTG
GGGTGGGGTGGGGGTGCGGGGTAGCGGGGTATTTGAGTAGATTTAAGTGAGACAAATCTTGGCC
ATTGGATGTTGAATGGATGGCTAGATGAGTTTTCTTGGTTTTGTTGGGTTGTTTTTTTCCCTTC
CCATTGTTTTAATTTATTACCTCATAGCACTTGTGAATATCTTAAAAAAGATTTTCCCAATGGA
CTAATATAGAAGAAAGATTAAGTGAGTAGTGAGGTGATTTCGATAAAATTTTAGTAGCTCAATT
GGTTGGCTGTTTGAACTTCCATCTTATTGGTGAGGGTTCGATTTGATATTTTGATAGAAAATTT
TGTTGTTTGCAATTGAGATATTATACAATGATTAAACAACACAAATTTATTAGTTTAAGATTTA
ATTATGTGTCTTTATTTTAATTTTTTTTAAATTATATTTCGTATTATATTTATTTTGTCAGATA
TATACATATCTAGTGCACTTAGATATATGTATATTGGATATATGCAACTCAAATTAGATGGATT
TTTTTCTAGATAGACTTTATTCAAGCGTGATTCACATGTATTTAAAAATTATTTCATTGTTTAA
CATCTAATATAATATCAAACAAGACTATATAGAGAAGTTTTGACTAAATTAAAGTTTGCATTCA
AGATCAACAAACTAGACTAACTAGAGATGTTGGTGTAGCACCCATATTCAAGAGGATATATTTT
TGCTTAATAAATAATACTAAGTACGTCCAATGCCCAACGTTTGAAGCTCGCCTAACAGATCTTA
CACATATTATATGTTAAAATCTTTAATTAACATTGTTGACTCTCATAATTCTTGAATAAATGAA
TGATACGTAATAATTTTTTAATCTATAGAGATATGAAGGTTAAGAGTAACTCAAATAACAAGTT
GTAGTATCACATATTTACTATTTGGTAACACTGTGAAAGTGATTATATATTACCTAACATTTCT
AAAAATACGTAGCGAAATTTTACTTTTTCATTTATCATTGGTCTTAATGGTTTTGTCATATGTC
TCAAAATTATCATATTTTATTTAGCTATTTGAAAGTGATTTTAATTTTATTCATGATGGAGTGA
AGTTTTCACTATAATACTAGTAAGTTTTATTGATTATTTTCTTTAAGGGAGGAAAACGGTAAAA
AAAATAGTTTTAGAAATAATGGTTCTTCTTATTATTAGAAAGTTAAGATATTAGATTATTTACA
CTTGTATAGTCATGTTAGAAGTTTTATTTTCTATGAATTTCCTTAATCATGTTTGTAATTATTT
CAAACTATTGATGTACTTTAATAATTTTGTGTTATTAAATTATTATTATACTATATTATAAATT
AAAAATTTAAAAATCCATAAGGGTTAGGCCCTATGTCTCAAGGCTTACACCTCGCCCTATACTA
AGTAAACGCTCCACCTCACATTCCTGCCTTTTAAAACACTGTTTGAGTCTAATATGATTTTTTT
AAAAAGAACAAATTTGTATTCAATGCCAACAAACTAATTTTACTAGAAAAGTTAATTTAGCACA
CATATTCAAAATGCATGAGAGGACATATTTTTAATAATATTTATTTTCTCAACCCCTTCTCATC
CCTCCCATTTGATGAACATTTGAGTTTGATTTGAATTAAAAATAAATAAATTTGCATTAAGTAT
CAACAAACTAGTCTTACTAAAAACAAAATGATGTAGCACACATCGTGCACAAAACCATCCTCTT
TTAGGTTATTTAACAAATACTTGCTTGCTATTACACCTATATACAATTCAATTGAAAAATTACA
ATTATAAATACCTCAATATAACACATGATTAAAGAGCTAATGATTTGTCAAGCTTGAATAAAAT
TCATTAGTGCAAAATAATAAGAGCACACTTCAATTAATTGAATACTAAGCATACTTAGTTGGAT
GTTAGTTTTTTTCCTTGCTGGATACTACAAGAACCAAACATAATTGTACAAATCATGAGGGACC
AAAATGAGAAAAAATAACTTTTTCAGATCTGTCGTATTTTATATATAAAAAGAGCACAAAACTA
AAAACTAGTTGTAAGTGAAATGATCCTATATATGTGTATTATGTAAACTAACACATATGCTACA
ATAATATTATACGATCTAATACGTAGAATACATCATTCTATGTAGCTTCGCTCAACTAGCAAAG
ATTGAGGGACTTGTATCTTAGGTCACAACTTCGAGCCCTATGTCATGCGAACTACACTTAAGTA
TCTAAAGAATAAGGAAAAGCTAAAATAAAAATAAAAAAAGGAAAACATCAATTTCCAATACACA
AATATTTATGCAATAAGAACACAAAAAAAATGAAGCATTCATTTTCCAAAGGTGAGCTAAAATT
AAGAAAAATAATATGTCAAAATACACAATTTTTCTTTCCTTCTCTTTCCCCCAAAAAATAAAGT
ACAGAAGATCCAAATGTTTCTTTCCATCTTCTTCGCCCTTCATCTTCAACTATCCCAAAATAAT
TCCCAAAAATCAATCTTGGCTTTACACTGACACTGTCTTTGTTTCCTTAACTCACTCTTATCTT
CACCACATTTCATTCTGAATCACTTTCCATGCTTCCCATAGCTTTCAATCCTCGCGGTTTCTGA
AAATAACATCATAATGTTGTTATAATAATAAAATGCACCCTCGTCAAGAACTATCATGTGCGTG
TTGGATACTCCAAAAGTATAGTAATGCATTTTTGGAGGATCTAACACGGATGCATGTTGGATCC
TCCAAAAGTAACGTAGTGCATTTTTGGAGTGGAGGATCTGACACGGGTGCATGAGATCCTCCAA
AAGTAAAGTAGTGCATTTTTGAAGGATCTAACACAGGTCCGTGTAATAAGAGGAGAGGAGGTGT
ATTACCTTCTTAGAGGTCTTCTTCTCTCTCACTTCATACCTTTCTTGGCACAAATCTTGCAACC
ATGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.114259596
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018