Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d029133_circ_g.2 |
ID in PlantcircBase | zma_circ_006527 |
Alias | Zm01circ00064 |
Organism | Zea mays |
Position | chr1: 59772106-59773749 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d029133 |
Parent gene annotation |
Nuclear cap-binding protein subunit 1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d029133_T008:4 Zm00001d029133_T001:1 Zm00001d029133_T009:4 Zm00001d029133_T006:4 Zm00001d029133_T004:4 Zm00001d029133_T002:4 Zm00001d029133_T005:4 Zm00001d029133_T010:3 Zm00001d029133_T003:4 Zm00001d029133_T013:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.068794872 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
59772107-59773746(+) 59772142-59773706(-) |
Potential amino acid sequence |
MCSKVVVPSSIIETFETLLSSAVTILDDETGNPSWQPRADFYVYCILASLPWAGPELFEQVPDE FERVLFGIQSYISIRRHFDDIAFSVFETDEGHSPNKKSLQDFMEDLWERIQALSRNGWKVKSVR FHCMQNLEHASLYVCVLIMAMDWNPITSLAVPKPHLPFEAQLVAGKSHRLSPISCPPPTPSQSS SEMLKGQEKHEADMKYPQRLRRLHIFPMNKAEMCSKVVVPSSIIETFETLLSSAVTILDDETGN PSWQPRADFYVYCILASLPWAGPELFEQVPDEFERVLFGIQSYISIRRHFDDIAFSVFETDEGH SPNKKSLQDFMEDLWERIQALSRNGWKVKSVRFHCMQNLEHASLYVCVLIMAMDWNPITSLAVP KPHLPFEAQLVAGKSHRLSPISCPPPTPSQSSSEMLKGQEKHEADMKYPQRLRRLHIFPMNKAE MCSKVVVPSSIIETFETLLSSAVTILDDETGNPSWQPRADFYVYCILASLPWAGPELFEQVPDE FERVLFGIQSYISIRRHFDDIAFSVFETDEGHSPNKKSLQDFMEDLWERIQALSRNGWKVKSVR FHCMQNLEHASLYVCVLIMAMDWNPITSLAVPKPHLPFEAQLVAGKSHRLSPISCPPPTPSQSS SEMLKGQEKHEADMKYPQRLRRLHIFPMNKAEMCSKVVVPSSIIETFETLLSSAVTILDDETGN PSWQPRADFYVYCILASLPWAGPELFEQVPDEFERVLFGIQSYISIRRHFDDIAFSVFETDEGH SPNKKSLQDFMEDLWERIQALSRNGWKVKSVRFHCMQNLEHASLYVCVLIMAMDWNPITSLAVP KPHLPFEAQLVAGKSHRLSPISCPPPTPSQSSSEMLKGQEKHEADMKYPQRLRRLHIFPMNKAE (+) MIELGTTTLLHISALFIGKICSLRSL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |