Detail information of Zm00001d029133_circ_g.2


General Information
CircRNA Name Zm00001d029133_circ_g.2
ID in PlantcircBase zma_circ_006527
Alias Zm01circ00064
Organism Zea mays
Position chr1: 59772106-59773749  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d029133
Parent gene annotation Nuclear cap-binding protein subunit 1
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d029133_T008:4
Zm00001d029133_T001:1
Zm00001d029133_T009:4
Zm00001d029133_T006:4
Zm00001d029133_T004:4
Zm00001d029133_T002:4
Zm00001d029133_T005:4
Zm00001d029133_T010:3
Zm00001d029133_T003:4
Zm00001d029133_T013:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTCTGAAATGTTAAAAGGTCAGGAGAAACATGAAGCCGATATGAAGTATCCTCAGAGACTT
CGTAGACTACATATCTTCCCAATGAATAAAGCTGAGatgtgcagcaaagttgtagttccaagtt
caatcatcgagacatttgagactctattatcatctgctgtaacaatattagatgatgagactgg
caatcctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1644
Transcript exons: 59772106-59773749
ATGTGCAGCAAAGTTGTAGTTCCAAGTTCAATCATCGAGACATTTGAGACTCTATTATCATCTG
CTGTAACAATATTAGATGATGAGACTGGCAATCCTTCGTGGCAACCTCGTGCGGACTTCTATGT
TTATTGTATTTTGGCTTCACTTCCATGGGCTGGTCCAGAATTGTTTGAGGTAACTCTGAGTTAC
ATATGTCACTGACTGTTTAGATGAATCTCCTTGCGTCACACATGCAAAAAGGAGAAGAATATTG
TGTTTATGGGTCACTGTTTCATAGTCCATAACCCCCCACACCCCCCACACACAATCCAAAAAAA
GCACGCGCACACACAAAAGAAAGAAAAAAGATGGTATGTACATGTTGTATTTTATGATGGCATG
GCGAGTTCTACCTTGAAGTTTGGCATGCACTTTTGGATTTTTTGAATGGTTTTCTAATAGATGA
AGTAGCCTTTTAGTGTTATCCAATATCCAGACGTGAGTTCGTGAGAAGTTTGTGCTGGAGCATG
ACTTGAGCACGCCAACTCTACTTGTTGGCAAATCTAACAACTTGTTCCTAATCTTGTTTAGTCA
AAACTTGTTGTGGCTAGCTGCTTAAGTTGCTTCTCTTTGGCATGTGGCCCAGTAGAGCAACCAT
TCTATGTCCCAGCAGAGCAATATACACAGGGAAGGCGTGGAGACGATGATCATGGAACTTTTGT
GAAATTATTTACCAGAATGTTTTGTTGATGGTAACTCGTTGATGACATGTACTTATGTAATTTA
CCATGCAGCAAGTTCCAGATGAGTTCGAGAGAGTTTTATTTGGTATACAGTCTTACATAAGTAT
CAGGAGGCATTTTGATGATATTGCTTTCTCTGTCTTTGAGACAGATGAAGGCCACTCTCCTAAC
AAAAAGGTAATGCTAATCTTTCTGAATGAACGGATCAGAAGCTTGTTTATTTCTTGATTCACTT
AAAATCTTGTATTATATTCAGGGCGTGTTTGGTTCCCACCTTGGGAAACACGCCTGGGCCTGGG
CCCTGGGGTTGGATGTGGCTGTTTGGCGCAGCTTCCCAGGCGAGGACTCGAACTAAACACACCC
TTAGTTCAGTATTAAAGGCTAGTCCTTGCAGGATTTTATGGAAGATCTGTGGGAGCGCATTCAA
GCTCTTTCCCGTAATGGATGGAAAGTTAAAAGCGGTATGCAAAGACAACCTTTTGCCTTAACTG
TCTGTTTCAATGGCAGTTTGTATGCAAGCCGCAAACTGATATTTGGTCATTATCTCATAAATCT
CAATTGTGGATAGAACTCTTGCTCACATTTTTTTGCAATTTAAAATATTTATCTTATTGTTAAA
TGTGAAGTCAGGTTTCATTGTATGCAAAATCTTGAACATGCTTCACTTTATGTTTGTGTTCTTA
TTATGGCAATGGACTGGAATCCAATTACTTCCCTGGCAGTTCCAAAACCCCACTTGCCATTTGA
AGCTCAGCTGGTGGCCGGGAAATCACATCGCCTTTCCCCTATAAGTTGCCCTCCACCCACTCCC
TCGCAGTCATCTTCTGAAATGTTAAAAGGTCAGGAGAAACATGAAGCCGATATGAAGTATCCTC
AGAGACTTCGTAGACTACATATCTTCCCAATGAATAAAGCTGAG

Genomic sequence ATGTGCAGCAAAGTTGTAGTTCCAAGTTCAATCATCGAGACATTTGAGACTCTATTATCATCTG
CTGTAACAATATTAGATGATGAGACTGGCAATCCTTCGTGGCAACCTCGTGCGGACTTCTATGT
TTATTGTATTTTGGCTTCACTTCCATGGGCTGGTCCAGAATTGTTTGAGGTAACTCTGAGTTAC
ATATGTCACTGACTGTTTAGATGAATCTCCTTGCGTCACACATGCAAAAAGGAGAAGAATATTG
TGTTTATGGGTCACTGTTTCATAGTCCATAACCCCCCACACCCCCCACACACAATCCAAAAAAA
GCACGCGCACACACAAAAGAAAGAAAAAAGATGGTATGTACATGTTGTATTTTATGATGGCATG
GCGAGTTCTACCTTGAAGTTTGGCATGCACTTTTGGATTTTTTGAATGGTTTTCTAATAGATGA
AGTAGCCTTTTAGTGTTATCCAATATCCAGACGTGAGTTCGTGAGAAGTTTGTGCTGGAGCATG
ACTTGAGCACGCCAACTCTACTTGTTGGCAAATCTAACAACTTGTTCCTAATCTTGTTTAGTCA
AAACTTGTTGTGGCTAGCTGCTTAAGTTGCTTCTCTTTGGCATGTGGCCCAGTAGAGCAACCAT
TCTATGTCCCAGCAGAGCAATATACACAGGGAAGGCGTGGAGACGATGATCATGGAACTTTTGT
GAAATTATTTACCAGAATGTTTTGTTGATGGTAACTCGTTGATGACATGTACTTATGTAATTTA
CCATGCAGCAAGTTCCAGATGAGTTCGAGAGAGTTTTATTTGGTATACAGTCTTACATAAGTAT
CAGGAGGCATTTTGATGATATTGCTTTCTCTGTCTTTGAGACAGATGAAGGCCACTCTCCTAAC
AAAAAGGTAATGCTAATCTTTCTGAATGAACGGATCAGAAGCTTGTTTATTTCTTGATTCACTT
AAAATCTTGTATTATATTCAGGGCGTGTTTGGTTCCCACCTTGGGAAACACGCCTGGGCCTGGG
CCCTGGGGTTGGATGTGGCTGTTTGGCGCAGCTTCCCAGGCGAGGACTCGAACTAAACACACCC
TTAGTTCAGTATTAAAGGCTAGTCCTTGCAGGATTTTATGGAAGATCTGTGGGAGCGCATTCAA
GCTCTTTCCCGTAATGGATGGAAAGTTAAAAGCGGTATGCAAAGACAACCTTTTGCCTTAACTG
TCTGTTTCAATGGCAGTTTGTATGCAAGCCGCAAACTGATATTTGGTCATTATCTCATAAATCT
CAATTGTGGATAGAACTCTTGCTCACATTTTTTTGCAATTTAAAATATTTATCTTATTGTTAAA
TGTGAAGTCAGGTTTCATTGTATGCAAAATCTTGAACATGCTTCACTTTATGTTTGTGTTCTTA
TTATGGCAATGGACTGGAATCCAATTACTTCCCTGGCAGTTCCAAAACCCCACTTGCCATTTGA
AGCTCAGCTGGTGGCCGGGAAATCACATCGCCTTTCCCCTATAAGTTGCCCTCCACCCACTCCC
TCGCAGTCATCTTCTGAAATGTTAAAAGGTCAGGAGAAACATGAAGCCGATATGAAGTATCCTC
AGAGACTTCGTAGACTACATATCTTCCCAATGAATAAAGCTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.068794872
Functional Information
Coding potential Y
Potential coding position 59772107-59773746(+)
59772142-59773706(-)
Potential amino acid sequence MCSKVVVPSSIIETFETLLSSAVTILDDETGNPSWQPRADFYVYCILASLPWAGPELFEQVPDE
FERVLFGIQSYISIRRHFDDIAFSVFETDEGHSPNKKSLQDFMEDLWERIQALSRNGWKVKSVR
FHCMQNLEHASLYVCVLIMAMDWNPITSLAVPKPHLPFEAQLVAGKSHRLSPISCPPPTPSQSS
SEMLKGQEKHEADMKYPQRLRRLHIFPMNKAEMCSKVVVPSSIIETFETLLSSAVTILDDETGN
PSWQPRADFYVYCILASLPWAGPELFEQVPDEFERVLFGIQSYISIRRHFDDIAFSVFETDEGH
SPNKKSLQDFMEDLWERIQALSRNGWKVKSVRFHCMQNLEHASLYVCVLIMAMDWNPITSLAVP
KPHLPFEAQLVAGKSHRLSPISCPPPTPSQSSSEMLKGQEKHEADMKYPQRLRRLHIFPMNKAE
MCSKVVVPSSIIETFETLLSSAVTILDDETGNPSWQPRADFYVYCILASLPWAGPELFEQVPDE
FERVLFGIQSYISIRRHFDDIAFSVFETDEGHSPNKKSLQDFMEDLWERIQALSRNGWKVKSVR
FHCMQNLEHASLYVCVLIMAMDWNPITSLAVPKPHLPFEAQLVAGKSHRLSPISCPPPTPSQSS
SEMLKGQEKHEADMKYPQRLRRLHIFPMNKAEMCSKVVVPSSIIETFETLLSSAVTILDDETGN
PSWQPRADFYVYCILASLPWAGPELFEQVPDEFERVLFGIQSYISIRRHFDDIAFSVFETDEGH
SPNKKSLQDFMEDLWERIQALSRNGWKVKSVRFHCMQNLEHASLYVCVLIMAMDWNPITSLAVP
KPHLPFEAQLVAGKSHRLSPISCPPPTPSQSSSEMLKGQEKHEADMKYPQRLRRLHIFPMNKAE
(+)
MIELGTTTLLHISALFIGKICSLRSL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020