Detail information of AT3G06650_circ_g.1


General Information
CircRNA Name AT3G06650_circ_g.1
ID in PlantcircBase ath_circ_020107
Alias 3:2079405-2079909
Organism Arabidpsis thaliana
Position chr3: 2079405-2079909  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G06650
Parent gene annotation ACLB-1
Parent gene strand -
Alternative splicing AT3G06650_circ_g.2 AT3G06650_circ_g.3 AT3G06650_circ_g.4 AT3G06650_circ_g.5 AT3G06650_circ_g.6 AT3G06650_circ_g.7
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G06650.2:2
AT3G06650.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGATCTAAGCTCGTTTGTTTGTTCTTACCTGTGACCAATGCCAGGGACACGGATTCCTTTCTT
CTTCATGCCTTCCACGAATTCATAAGGTGTGAGATTccgattaaaccgatggatcgagcgagga
cgaagaggccgttgagataaccgatctgaactatttcgtctatctcttgttttgtgaacatccc
acttccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGATTAAACCGATGGATCGAGCGAGGACGAAGAGGCCGTTGAGATAACCGATCTGAACTATTT
CGTCTATCTCTTGTTTTGTGAACATCCCACTTCCAGCGAGAAGGTCTAAGAAGAGAGATCCAAT
GGCTCCATCGACGTTGAGTACCAGGTTGTTGGCTTTAGACAGTGTGTATGTCTCTACTTGGACT
GCGTATTCCATGTACTTCACTGCAGGGAAGTTAGACCGTGCAAATTTCTGAAGCAGCTCCACTC
TTTTGTCTCTGTTGTCTCTGCTCTTTATCCTACAAATATGTAAGAAAACAAATCCAGTCAGAGA
ATGTTCTGTTCCTGCTATTGATAAAAAGGATACTTGATTGATATATAACGCCAATTTCCACATT
TACATGTGAAAACAAACGATGAAGATCTAAGCTCGTTTGTTTGTTCTTACCTGTGACCAATGCC
AGGGACACGGATTCCTTTCTTCTTCATGCCTTCCACGAATTCATAAGGTGTGAGATT
Conservation Information
Conserved circRNAs NA
PMCS 0.214216155
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020