Plant Circular RNA Database

Detail information of Solyc12g011180.1_circ_g.3

			
						 General Information
					
						CircRNA Name
						Solyc12g011180.1_circ_g.3
					
						ID in PlantcircBase
						sly_circ_003544
					
						Alias
						12:4022638|4026890, Slcirc178
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr12: 4022638-4026890  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						Segemehl, CIRI
					
						Parent gene
						
							Solyc12g011180.1						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Solyc12g011180.1_circ_g.1 Solyc12g011180.1_circ_g.2 						
					
						Support reads
						56/31
					
						Tissues
						fruit/leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc12g011180.1.1:6

General Information
CircRNA Name	Solyc12g011180.1_circ_g.3
ID in PlantcircBase	sly_circ_003544
Alias	12:4022638\|4026890, Slcirc178
Organism	Solanum lycopersicum
Position	chr12: 4022638-4026890 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	Segemehl, CIRI
Parent gene	Solyc12g011180.1
Parent gene annotation	protein_coding
Parent gene strand	-
Alternative splicing	Solyc12g011180.1_circ_g.1 Solyc12g011180.1_circ_g.2
Support reads	56/31
Tissues	fruit/leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc12g011180.1.1:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATTTTACGCTCTTCAAACAATTCAGATACTGCCTTCTGCCATCTCCAACGATCTGAGCCCTG
AGGAATGTACTTTTCCCAGTCCACTGGCTTTGGAATgtggatcatcatgtagagagacattccc
ttcctggacagcctaagaagacgatgcatcaggtgacttcacaatgaggaatgcttattacaaa
taacttgt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 768
Transcript exons: 4022638-4022664,4022769-4022905,4023208-4023403,4024206-
4024344,4026505-4026603,4026721-4026890
GTGGATCATCATGTAGAGAGACATTCCAAGGTCAAGAGATTCATATGCATCCATCTCCTCTTCA
ACATTATCATCATCGAACTCATCTTCATAATCTTCTAAATCATCAGGGTCATCAACATCATGGT
TTTCTGCTTGTTCATCGACTTCATTGTTCTCCGCATCTTTATTGGTTTTTTCTTGCTCTTCCGG
TCTTGCAACTTTCACATACGTATGAGTCCTCTTTGACTTCTCAAAGCGGGTGGACATAGAATTT
AGTAAAGACTCAGCACGCGGATGAGGGCATACTGACATAAATCTCACATCAATACGACGTCTCA
AGCAATCAATAGTATGAAAGGAGAACCATCCTGTTACATTATTGCAAGTTTCTTCCTTTGAAGG
TTTACTGATTTCTTGTTGAATGTAGTCATCCTTGAGTTCACAAAGCTGCAATGCTAGCTGACAT
TTACACGGAAAAACACGGAAGGCACATATGTCATCCCATCTATGTTGCAATATGCGGGATTCGG
GATCCTTACGAGGATCATAACCTTTTTTTATCCAGAATCTACGGAAAGGCCCATTCAAAAAGTA
ATATGCTACTCCACAAAGAAGTCTTTTTAGCATGTTATCTCGAAATTTCAGACCCCTATCATGT
AAGCGCTCAGCTAATGACTCTTTGGCCCAAATTTTACGCTCTTCAAACAATTCAGATACTGCCT
TCTGCCATCTCCAACGATCTGAGCCCTGAGGAATGTACTTTTCCCAGTCCACTGGCTTTGGAAT
						
					

						Genomic sequence
						
							GTGGATCATCATGTAGAGAGACATTCCCTTCCTGGACAGCCTAAGAAGACGATGCATCAGGTGA
CTTCACAATGAGGAATGCTTATTACAAATAACTTGTGAATGCATCCCATATATAAATATAAACT
TACAAGGTCAAGAGATTCATATGCATCCATCTCCTCTTCAACATTATCATCATCGAACTCATCT
TCATAATCTTCTAAATCATCAGGGTCATCAACATCATGGTTTTCTGCTTGTTCATCGACTTCAT
TGTTCTCCGCATCTGACATTTCAAGGAACTTATTAAGAGATAATACTTGAGTGGAGGCACTGAT
ATTACTACAATGACAAACTACTTAAAAGATAAAATATATCAATATTAAGATTAAAATAAATTTC
AGAAGTTTGAAAGCACTCCAGAGAGCAAATCAGCTGTAGGAATAATTTTAGCTTTAATATTTAA
GATTTAGAAATTTCCAAAAATACGAAAGTTAATTACATTAACAATTAAGTTTCCTGATAGATAA
TTATGTCAATAATTAAAATTGATAAAATAGACTACAAATAACACTGACTGCTTTAAACCTTTAT
TGGTTTTTTCTTGCTCTTCCGGTCTTGCAACTTTCACATACGTATGAGTCCTCTTTGACTTCTC
AAAGCGGGTGGACATAGAATTTAGTAAAGACTCAGCACGCGGATGAGGGCATACTGACATAAAT
CTCACATCAATACGACGTCTCAAGCAATCAATAGTATGAAAGGAGAACCATCCTGTTACATTCT
GCAAATAAAATAATCAGAGGAAAAGTATCACTGGAGATTTCTTCAGTATTTGTCAGAATACACA
AAGATGGAACCATTCAAGCAAATCGGAGTACAACACATACACACACATACAACCCCCAGGAAGC
AAACAATCAATTATCTCATGCACATAAGAAGGAACAAGGCACCAGGCAGAGCATGTTAGATATA
ATTAACGAAGTTCATTATTCATAGTACTACATCCAATTTGAGAACCAAACGACATAAAGAAAAA
AAAAAGGGTTAAAGAATAAGGAAATATCAAGAGGTAACATGAACTTTAGCATAGCTAAAAAAGG
AAGTAAAACGATCAATCTCTGGTGGACAAAAATCTCTTCTACGCCAGATTGACTTCTAATCCTC
AAGATTTTCAAGTCAATTGATCTAATTATCTTTCAGAATAAGAGGTCTTTCGAAAAGATATATG
ACTTTTGACAATATATGCATGAGTGCAGCACACAAAAATATATTAATATCTCAAAGATAGTTTC
ACACATTTTCATTTCTCGACTCACTCTATCAGTAGTTTACACAGTGAATCACATAAGTCTTTTT
TAACTTTGGCAAGGAAAGGCAATCAGGAAATTTGCTACGTGGGCATCATAAACTCCAATCATAC
TGAACAACTAAATGCTAATGTTGTTTCTGATTTGCGGAAAGCAGGGGCATCATGAGCACCACAA
GCCATCCATGCATCAACATATAACTTACATTTCATAAACCTGAGAAAATATATAGGATTCTCAT
TGAGAATCAATTTTTTACTAAATATAACATACATTGCAAGTTTCTTCCTTTGAAGGTTTACTGA
TTTCTTGTTGAATGTAGTCATCCTTGAGTTCACAAAGCTGCAATGCTAGCTGACATTTACACGG
AAAAACACGGAAGGCACATATGTCATCCCATCTATGTTGCAATCTGTAGAAAAAAGAAAATACG
GCATTAAAAAAAGTCTTACTATTTAGCTATCATTATCCACTAAGACCAAATTAAATCAGATTTA
TGTAAGATCATATTGGCTAGTTGAGTTGGACACCAGACTTAATTTAATTGCTTCCCAGTTAAAC
AACATGAATAGAAAAGCAAAACATATGAGAACATGCAGCTGCAGAAAGAAGTTAGCAACTGCAT
TTATTCATTCTATCTCTTGGATTCTATCAATACACATTAAAGAGGTTTTAAACTTGTAGCTCCA
AGGATGTGGCCTAGTAGACAATGGTGTGGGTTGAGAACCATGAAGTTTCAAATTCAAATCCCAG
TGGACTTAGTGTTTTCTTCCCATCTGTCCAAGCCTGAGCAGACAGAGTTACCTAGTACTTGTGT
GTTGGTGAGTGAGTAGGAACCCTGTGAAATTAGTCGAAGAACACGCAAGTTGGCCCACACACCA
TGGTTATCAAATTAAAGAGTAGTGTTAAGTTGTGAAATTAATAATCATTTTCATTTGAATGTAA
TTCAGACACTCTCTTAAACAATATGCAGCCATAACTGCATAATCAAAGCAGAGGCTGTTTTACA
GAACAATCTCTCATAAGGCTCTCTCCTCGTAGGGATCCATAGATCACGAGCGATTTGAAATGAT
TGCAATCTAAAGACACCGTAAGGCCAGAGACATGATTTTTTTTCATGTTAGCTTTAGCTGAATA
AGCTAAAGAATTGTTTTAAATTTTATCAATTTATTGAACTTAATAGCTCGCCAATATTTATTCC
AGTTTAATCAGAAGAACACAACTCAAAAAACATGTAATCCCGTTGGCATCTAAAACCAGACATA
TAGGACATATCTTGAGGTACTTCTGAAAAATCAAAAAGAGTGCACTTTGCACAACAAAAGCAAG
ATTCTTTCTATTTTAGGTAATGTAAGCTTAAAGATGGATAAGATTCAATTTGAGATAAAGATAA
AAGCATTCTTACCTACATGAGTACAGAGAGCTCAGAGAGTTTAAATTATAAAGAAACATATATA
TGAGTTGTGAATGGATTCCCTACCCAGATGACGAACGGCTCTCACAGTAGCTTCGTAATTCATG
GTGCACTCGGAAATCAATATTCTGGTATCTGTTAAGAAAAATGCAAGAAGTGGGCTATTGGCAT
GATGAAGAGTTAAAAAGAAACCACAACTGTAAATAACATGTGAGAATTGATTCTGAGTACCTTA
AGGCTTAAGAAATACTAGATCAAGAAAAATGCATATACTTATAAATGGATCACATAACTCTGTT
GTTGAAAATAAAGATATTGATATGGAAAAAGAATAAGTAGGCCCTTGGCAAGAAGTGGTTAGTA
TTTAGCGAAAGGAAGAGAACTGTTTCATCAAAGAGCATATAATAAAATGAGGTCGAGAAAGTTG
ATATTTGTTATGGACCCACATATTAAAGGAGAAGACAGCTATTAAAGGGTAGAAACCTATTCTC
CCTCTTATTTTACACACAAAAGCAACTGAAAACAAAAAGTATCACTTTACTTTCTTCCCCATTT
TCATATCCTTTTTCTTCCTTTCCTTAGTTTCCTAACAAGAGTAAGAGTTTACCAAAAAATAAAA
ACAGGTTTACAAAGTGGAAGAGAGTTAGAGATATAAAGTTCTCTCTTTATCCCACCTGTGAGGA
AAAGGAATCAGCTTTAGTTCAGAAGAAAAGAAGACAAAAGGGGAGGGCCAAAGATAGAGGGGAA
CACCGGAGAAAGTGGCATTCCATCTATAGGATAGATCACACTTCCAAATCTGGTCAGTTTCAAG
ATGTATGTTTGAATTTTTTCACCTTAAGTCCTAAACTGTATGCTGTCATAGGATTTCTGTCCCC
CCCACCCCCACCCCCCTCCAACCTCTCACAACTGCAAATATACAGTTTTTCCAGGGTCTCTACA
GATATAAGATATACAAACGAACTATGAACAAGCTAGTAAAAGATACATTTCGGATGACATATAT
GACACAACCTCTAAAAAATCAGGAAATGAGGGGAAAAAAACTCAGAAAGCATTATCAGTGAATA
GTGAATATATATCAATTAGTGAGATTCACAAGGAAAACACTTTTTGACAAGTAAAGAATTAAAA
AAAAAAGGATTATCGATTCATTCTTACATGCGGGATTCGGGATCCTTACGAGGATCATAACCTT
TTTTTATCCAGAATCTACGGAAAGGCCCATTCAAAAAGTAATATGCTACTCCACAAAGAAGTCT
GCATAATTATGGAGATAGACCAAAACTTCATAGTAGCAATATTCACTTCCAAGAAATAATTAAA
TAATTCAATCCGTATAAAAGAAGTGAAGACTATAAGAATTGTAAATGCTACCTTTTTAGCATGT
TATCTCGAAATTTCAGACCCCTATCATGTAAGCGCTCAGCTAATGACTCTTTGGCCCAAATTTT
ACGCTCTTCAAACAATTCAGATACTGCCTTCTGCCATCTCCAACGATCTGAGCCCTGAGGAATG
TACTTTTCCCAGTCCACTGGCTTTGGAAT
						
					

			
		

Sequences
Splice junction sequence	AAATTTTACGCTCTTCAAACAATTCAGATACTGCCTTCTGCCATCTCCAACGATCTGAGCCCTG AGGAATGTACTTTTCCCAGTCCACTGGCTTTGGAATgtggatcatcatgtagagagacattccc ttcctggacagcctaagaagacgatgcatcaggtgacttcacaatgaggaatgcttattacaaa taacttgt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 768 Transcript exons: 4022638-4022664,4022769-4022905,4023208-4023403,4024206- 4024344,4026505-4026603,4026721-4026890 GTGGATCATCATGTAGAGAGACATTCCAAGGTCAAGAGATTCATATGCATCCATCTCCTCTTCA ACATTATCATCATCGAACTCATCTTCATAATCTTCTAAATCATCAGGGTCATCAACATCATGGT TTTCTGCTTGTTCATCGACTTCATTGTTCTCCGCATCTTTATTGGTTTTTTCTTGCTCTTCCGG TCTTGCAACTTTCACATACGTATGAGTCCTCTTTGACTTCTCAAAGCGGGTGGACATAGAATTT AGTAAAGACTCAGCACGCGGATGAGGGCATACTGACATAAATCTCACATCAATACGACGTCTCA AGCAATCAATAGTATGAAAGGAGAACCATCCTGTTACATTATTGCAAGTTTCTTCCTTTGAAGG TTTACTGATTTCTTGTTGAATGTAGTCATCCTTGAGTTCACAAAGCTGCAATGCTAGCTGACAT TTACACGGAAAAACACGGAAGGCACATATGTCATCCCATCTATGTTGCAATATGCGGGATTCGG GATCCTTACGAGGATCATAACCTTTTTTTATCCAGAATCTACGGAAAGGCCCATTCAAAAAGTA ATATGCTACTCCACAAAGAAGTCTTTTTAGCATGTTATCTCGAAATTTCAGACCCCTATCATGT AAGCGCTCAGCTAATGACTCTTTGGCCCAAATTTTACGCTCTTCAAACAATTCAGATACTGCCT TCTGCCATCTCCAACGATCTGAGCCCTGAGGAATGTACTTTTCCCAGTCCACTGGCTTTGGAAT
Genomic sequence	GTGGATCATCATGTAGAGAGACATTCCCTTCCTGGACAGCCTAAGAAGACGATGCATCAGGTGA CTTCACAATGAGGAATGCTTATTACAAATAACTTGTGAATGCATCCCATATATAAATATAAACT TACAAGGTCAAGAGATTCATATGCATCCATCTCCTCTTCAACATTATCATCATCGAACTCATCT TCATAATCTTCTAAATCATCAGGGTCATCAACATCATGGTTTTCTGCTTGTTCATCGACTTCAT TGTTCTCCGCATCTGACATTTCAAGGAACTTATTAAGAGATAATACTTGAGTGGAGGCACTGAT ATTACTACAATGACAAACTACTTAAAAGATAAAATATATCAATATTAAGATTAAAATAAATTTC AGAAGTTTGAAAGCACTCCAGAGAGCAAATCAGCTGTAGGAATAATTTTAGCTTTAATATTTAA GATTTAGAAATTTCCAAAAATACGAAAGTTAATTACATTAACAATTAAGTTTCCTGATAGATAA TTATGTCAATAATTAAAATTGATAAAATAGACTACAAATAACACTGACTGCTTTAAACCTTTAT TGGTTTTTTCTTGCTCTTCCGGTCTTGCAACTTTCACATACGTATGAGTCCTCTTTGACTTCTC AAAGCGGGTGGACATAGAATTTAGTAAAGACTCAGCACGCGGATGAGGGCATACTGACATAAAT CTCACATCAATACGACGTCTCAAGCAATCAATAGTATGAAAGGAGAACCATCCTGTTACATTCT GCAAATAAAATAATCAGAGGAAAAGTATCACTGGAGATTTCTTCAGTATTTGTCAGAATACACA AAGATGGAACCATTCAAGCAAATCGGAGTACAACACATACACACACATACAACCCCCAGGAAGC AAACAATCAATTATCTCATGCACATAAGAAGGAACAAGGCACCAGGCAGAGCATGTTAGATATA ATTAACGAAGTTCATTATTCATAGTACTACATCCAATTTGAGAACCAAACGACATAAAGAAAAA AAAAAGGGTTAAAGAATAAGGAAATATCAAGAGGTAACATGAACTTTAGCATAGCTAAAAAAGG AAGTAAAACGATCAATCTCTGGTGGACAAAAATCTCTTCTACGCCAGATTGACTTCTAATCCTC AAGATTTTCAAGTCAATTGATCTAATTATCTTTCAGAATAAGAGGTCTTTCGAAAAGATATATG ACTTTTGACAATATATGCATGAGTGCAGCACACAAAAATATATTAATATCTCAAAGATAGTTTC ACACATTTTCATTTCTCGACTCACTCTATCAGTAGTTTACACAGTGAATCACATAAGTCTTTTT TAACTTTGGCAAGGAAAGGCAATCAGGAAATTTGCTACGTGGGCATCATAAACTCCAATCATAC TGAACAACTAAATGCTAATGTTGTTTCTGATTTGCGGAAAGCAGGGGCATCATGAGCACCACAA GCCATCCATGCATCAACATATAACTTACATTTCATAAACCTGAGAAAATATATAGGATTCTCAT TGAGAATCAATTTTTTACTAAATATAACATACATTGCAAGTTTCTTCCTTTGAAGGTTTACTGA TTTCTTGTTGAATGTAGTCATCCTTGAGTTCACAAAGCTGCAATGCTAGCTGACATTTACACGG AAAAACACGGAAGGCACATATGTCATCCCATCTATGTTGCAATCTGTAGAAAAAAGAAAATACG GCATTAAAAAAAGTCTTACTATTTAGCTATCATTATCCACTAAGACCAAATTAAATCAGATTTA TGTAAGATCATATTGGCTAGTTGAGTTGGACACCAGACTTAATTTAATTGCTTCCCAGTTAAAC AACATGAATAGAAAAGCAAAACATATGAGAACATGCAGCTGCAGAAAGAAGTTAGCAACTGCAT TTATTCATTCTATCTCTTGGATTCTATCAATACACATTAAAGAGGTTTTAAACTTGTAGCTCCA AGGATGTGGCCTAGTAGACAATGGTGTGGGTTGAGAACCATGAAGTTTCAAATTCAAATCCCAG TGGACTTAGTGTTTTCTTCCCATCTGTCCAAGCCTGAGCAGACAGAGTTACCTAGTACTTGTGT GTTGGTGAGTGAGTAGGAACCCTGTGAAATTAGTCGAAGAACACGCAAGTTGGCCCACACACCA TGGTTATCAAATTAAAGAGTAGTGTTAAGTTGTGAAATTAATAATCATTTTCATTTGAATGTAA TTCAGACACTCTCTTAAACAATATGCAGCCATAACTGCATAATCAAAGCAGAGGCTGTTTTACA GAACAATCTCTCATAAGGCTCTCTCCTCGTAGGGATCCATAGATCACGAGCGATTTGAAATGAT TGCAATCTAAAGACACCGTAAGGCCAGAGACATGATTTTTTTTCATGTTAGCTTTAGCTGAATA AGCTAAAGAATTGTTTTAAATTTTATCAATTTATTGAACTTAATAGCTCGCCAATATTTATTCC AGTTTAATCAGAAGAACACAACTCAAAAAACATGTAATCCCGTTGGCATCTAAAACCAGACATA TAGGACATATCTTGAGGTACTTCTGAAAAATCAAAAAGAGTGCACTTTGCACAACAAAAGCAAG ATTCTTTCTATTTTAGGTAATGTAAGCTTAAAGATGGATAAGATTCAATTTGAGATAAAGATAA AAGCATTCTTACCTACATGAGTACAGAGAGCTCAGAGAGTTTAAATTATAAAGAAACATATATA TGAGTTGTGAATGGATTCCCTACCCAGATGACGAACGGCTCTCACAGTAGCTTCGTAATTCATG GTGCACTCGGAAATCAATATTCTGGTATCTGTTAAGAAAAATGCAAGAAGTGGGCTATTGGCAT GATGAAGAGTTAAAAAGAAACCACAACTGTAAATAACATGTGAGAATTGATTCTGAGTACCTTA AGGCTTAAGAAATACTAGATCAAGAAAAATGCATATACTTATAAATGGATCACATAACTCTGTT GTTGAAAATAAAGATATTGATATGGAAAAAGAATAAGTAGGCCCTTGGCAAGAAGTGGTTAGTA TTTAGCGAAAGGAAGAGAACTGTTTCATCAAAGAGCATATAATAAAATGAGGTCGAGAAAGTTG ATATTTGTTATGGACCCACATATTAAAGGAGAAGACAGCTATTAAAGGGTAGAAACCTATTCTC CCTCTTATTTTACACACAAAAGCAACTGAAAACAAAAAGTATCACTTTACTTTCTTCCCCATTT TCATATCCTTTTTCTTCCTTTCCTTAGTTTCCTAACAAGAGTAAGAGTTTACCAAAAAATAAAA ACAGGTTTACAAAGTGGAAGAGAGTTAGAGATATAAAGTTCTCTCTTTATCCCACCTGTGAGGA AAAGGAATCAGCTTTAGTTCAGAAGAAAAGAAGACAAAAGGGGAGGGCCAAAGATAGAGGGGAA CACCGGAGAAAGTGGCATTCCATCTATAGGATAGATCACACTTCCAAATCTGGTCAGTTTCAAG ATGTATGTTTGAATTTTTTCACCTTAAGTCCTAAACTGTATGCTGTCATAGGATTTCTGTCCCC CCCACCCCCACCCCCCTCCAACCTCTCACAACTGCAAATATACAGTTTTTCCAGGGTCTCTACA GATATAAGATATACAAACGAACTATGAACAAGCTAGTAAAAGATACATTTCGGATGACATATAT GACACAACCTCTAAAAAATCAGGAAATGAGGGGAAAAAAACTCAGAAAGCATTATCAGTGAATA GTGAATATATATCAATTAGTGAGATTCACAAGGAAAACACTTTTTGACAAGTAAAGAATTAAAA AAAAAAGGATTATCGATTCATTCTTACATGCGGGATTCGGGATCCTTACGAGGATCATAACCTT TTTTTATCCAGAATCTACGGAAAGGCCCATTCAAAAAGTAATATGCTACTCCACAAAGAAGTCT GCATAATTATGGAGATAGACCAAAACTTCATAGTAGCAATATTCACTTCCAAGAAATAATTAAA TAATTCAATCCGTATAAAAGAAGTGAAGACTATAAGAATTGTAAATGCTACCTTTTTAGCATGT TATCTCGAAATTTCAGACCCCTATCATGTAAGCGCTCAGCTAATGACTCTTTGGCCCAAATTTT ACGCTCTTCAAACAATTCAGATACTGCCTTCTGCCATCTCCAACGATCTGAGCCCTGAGGAATG TACTTTTCCCAGTCCACTGGCTTTGGAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.746363632

Conservation Information
Conserved circRNAs	NA
PMCS	0.746363632

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4024281-4023291(+)
4026733-4022640(-)
						
						Potential amino acid sequence
						
							MLADIYTEKHGRHICHPIYVAICGIRDPYEDHNLFLSRIYGKAHSKSNMLLHKEVFLACYLEIS
DPYHVSAQLMTLWPKFYALQTIQILPSAISNDLSPEECTFPSPLALECGSSCRETFQGQEIHMH
PSPLQHYHHRTHLHNLLNHQGHQHHGFLLVHRLHCSPHLYWFFLALPVLQLSHTYESSLTSQSG
WT*(+)
MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL
KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS
KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL
DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN
MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL
KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS
KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL
DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN
MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL
KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS
KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL
DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN
MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL
KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS
KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL
DLGMSLYMMIH(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4024281-4023291(+) 4026733-4022640(-)
Potential amino acid sequence	MLADIYTEKHGRHICHPIYVAICGIRDPYEDHNLFLSRIYGKAHSKSNMLLHKEVFLACYLEIS DPYHVSAQLMTLWPKFYALQTIQILPSAISNDLSPEECTFPSPLALECGSSCRETFQGQEIHMH PSPLQHYHHRTHLHNLLNHQGHQHHGFLLVHRLHCSPHLYWFFLALPVLQLSHTYESSLTSQSG WT*(+) MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL DLGMSLYMMIHIPKPVDWEKYIPQGSDRWRWQKAVSELFEERKIWAKESLAERLHDRGLKFRDN MLKRLLCGVAYYFLNGPFRRFWIKKGYDPRKDPESRILQHRWDDICAFRVFPCKCQLALQLCEL KDDYIQQEISKPSKEETCNNVTGWFSFHTIDCLRRRIDVRFMSVCPHPRAESLLNSMSTRFEKS KRTHTYVKVARPEEQEKTNKDAENNEVDEQAENHDVDDPDDLEDYEDEFDDDNVEEEMDAYESL DLGMSLYMMIH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zuo et al., 2016; Tan et al., 2017; Yin et al., 2018; Wang et al., 2018b

circRNA

Detail information of Solyc12g011180.1_circ_g.3

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