Detail information of Zm00001d038672_circ_g.1


General Information
CircRNA Name Zm00001d038672_circ_g.1
ID in PlantcircBase zma_circ_009149
Alias zma_circ_0002404
Organism Zea mays
Position chr6: 162351292-162355243  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d038672
Parent gene annotation Putative AGC protein kinase family protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d038672_T006:6
Zm00001d038672_T004:7
Zm00001d038672_T002:7
Zm00001d038672_T003:6
Zm00001d038672_T007:6
Zm00001d038672_T005:4
Zm00001d038672_T001:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTTCTTCTTTAGGTGGTCCCTTGGTGCTATTATGTATGAAATGCTAGTTGGTTACCCTCCA
TTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGatagagggtgtcgtccccactccccagc
atctggttccacggagagttgttgatcttggatacctgatccgcaatttggggctgattgagtc
acttgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAGAGGGTGTCGTCCCCACTCCCCAGCATCTGGTTCCACGGAGAGTTGTTGATCTTGGATACC
TGATCCGCAATTTGGGGCTGATTGAGTCACTTGACCTTTTCAACATCTGCCCCGTTCCTGCTGC
CTTGCTCACTATAAGAGGCTGGCCTGGTTCCAGAGATGATTCTATTGTGAGTGGAGATGGATTC
TGTGAGAAGTTGGTTCCAGAAGTTCCAGCCGAGAGACAAATCGAAGAGGCCAGTGGTGGCTGCC
AGACATGGAAAAGATCCAGGAAAGCCCCCGATGGACGATGCCCCTTCTAGTGCGACGAAACAGA
GGGTTGCCGCTGCAAAACAGTACATTGAGAACCACTACAAGACCCAGATGAAGTCCCTGCAAGA
TAGGAAAGAGAGGTAGGCAGTCCAGTGGATATTAATAAACTTATTTTCACCTTTGTCTGCTTTG
GCTATAGATTTAGCACCCATCTAGTGATCTAGTTTTCATACAAGTAGCAAAATTCCAAATTACG
ACTTAAGTGTAGAATAGAAAGAAATGAAGGTCCCCATCTTGCTGTTATCAAGCAGGATGCCCAA
CTGCACACATGCCATGCCATGTTTGGACTAGAATGGCAAGCACAGCCACACAGGTGCGGCCACG
CGGATGACTAAGATCAAGTCCTTACAAGCGTGTTGTGACCATGGTTTAGCCCAGAATAGAAAGC
CCAGTTACAGCGTTAACTCAAGTTAGGTAGCTCCAGTACCATATTATGTTGTAGCTGTTCTTTT
TTGTGAATTGTATTAAGTCGTAGCTCTGTAGTGAATAGTGATACACAATGATCTAGCAAAGCTA
TGAACTCAACGCTGAATATGATTTTATGGACTTCTTTAGGATTGACTCTTTGAACTTAAAAACT
TACTCAAGTAAACTTACATACTCATTCTAAATGATGTTCACCGAATTTGTTTCAAAACTTATGC
AATTCAAACTTATACCTACAATCATCATCAAATTTCAAATGTGAAGACTTAATTTTCTCGTCAA
CCAATCTACTTGCTGGATTTCATTTATTTGATGCAAATTGACTTGCAGGAACTTGTGATCTTAC
CTTTACAATATATTGGTTTACTTTTAGGCGCTGGATGTTGGAGAGAAAATTACAAGATGCCGAA
GTTCCTGTAGAAGAGCAAAATAACATTCTTAAGCATTTGGAGAAAAAAGAGACTGAATATATGC
GCTTGCAGAGACACAAGATGGGAGTTGAAGATTTTGAACTTTTGACTATTATTGGGAGAGGTGC
ATTCGGAGAGGTACAGCTCTTTTCAGTTTCCATTCTTTAACAGTTTGTGCAAACCAGTCCAATG
ATATACATGACATTATTTCTGTTTCTTTTGAATTCTATCTATCCCATCAGCGTTTGTTGTGCAC
AGGCGTTTTCTTTTTGAAGAAGCCTCTGCTTATATAAAAAGCATATAAAAATTCTACACATGCA
CCACATATTGACTTGACAATATTGCTGGTACAATCCTTTTCACTAGATAAATGTGGATATTTCA
TATAGTTGGAGCTTGGAACTTGGTGCCTTGCTGCATCTTGTATTTTAGGACAACTCTACAAATG
CAACTCTTCTGCTTGTAAGAAAACTGGGATAAAGTTAACCTTGTGGTCCTTGTTCTTCTGACAT
TCATCTGGCACTTTTTTTGGTATTTTCTTTGGACCTTTGTAGGCCATGTTTTTAGTCTCCCAAA
TTGATGGCATTCAATTGTCTTGTGGTCCCTTGATGCATGCTTGTGATGAGTTTTCATTCGTTAT
GTTCACATATGACATATGCAAATATTCTAACACACCCTGATCTTTTTTCAAGCACTATTTTCAT
GTGCCTTCTCCATTATTGAGGTAACTGATGGATTGTATCATTTTACTGCGGCTTGCAGTTATTT
ATGAAAAGAGGCCTGGTCCTCGATTTTTGTAATATACCTATGAAAAAAAATCATTTGTCCTTAA
TATCCATTTTGGGCTTTGAGTTAATATGTAGCATCTTTGTTATCTGCTTATTGTTATTTATTTT
GTTTTTATATTTAGTTATGATATTGGATGAACACATTTTTTACCTTTCTTTCTTTACAAGAGGA
GAATTAGAGAACAATCATTCTTCTTAGTGCAGTTGACTCATATAATTTTAAGTACCTCTTATTA
ACAACTGGTTTAACTGATTCTTCTGTTGTCTTCTGTTTTAGTTGAGTCTGATCGTTTCCTTTCT
TTTTGTGTTTTGCCATTCTTTTTGCTATGTTACTTATGCTACTCTTAACTGTGCAGGTGCGTCT
TTGTAGAGAGAAGGTCTCTAAGAATGTTTATGCAATGAAAAAGCTCAAGAAATCTGAAATGCTT
CGTAGGGGCCAGGTACCATGTACGGTCTTTCTGCATTGTTTGGCATTCTCTATTTCTGTTTTGC
TTGTTATCCTCTGACATGTGTACATATATTTCAGGTAGAACATGTCAAAGCTGAAAGGAACCTT
CTTGCTGAAGTTGATAGTGCTTACATAGTTAAGCTCTATTATTCTTTCCAAGACGAAGAGTTCT
TATATCTCATCATGGAATACCTTCCTGGTGGAGACATGATGACTTTACTTATGCGCAAAGACAC
ACTAACAGAAGATGAAGCTAGATTTTATATTGCAGAAACTGTGCTTGCCATCGAGTCTATTCAC
AAGCACAACTATGTTCATCGGTACCATACTAGTGTCTCTATGTTTTTTTGTCCCAAAAAAGCCA
GATGATTCTATAATTTAAATAATGTATCCCTATGTTCCTTTTGTCAGGGATATCAAACCAGATA
ATCTTTTGTTAGATCACAGTGGTCACCTGAAGCTTTCTGACTTCGGTTTGTGTAAACCTTTGGA
CAGCAGTAATTTCCCTAATTTGAATGAACCAGATTATATGTCTGGAAAAGTTACCACACCTTTG
CCTGATACCACTCGGTTAAGCAACCCTTCTGCACCGAGGCGTACACAGCAGGAGCAATTGTCAC
ACTGGCAAAAGAACCGTCGGATGTTGGTAAGTAGTGTATAAAGATGGATTAACTTATTGATGGC
TTGGGAACAATGTTATGGTGGCTTTTGTTTGAATCTTTGAACTCACTTTCCTAGGTCTGCATTA
TATCCATTTTTTGTGCCTCCTATAACCTATTAGGCATAATAAAACCATAATGAAGCTATATAGC
TCCTTCAAATTTGTATGTTTTGAACCGGGTTTCCATAGATGATGTTTGTATGATCTCATGTCTC
TGAAACAATCGTATTGAACTTCTAAAAGACAGAAAGTGGTTCCCAGTTCTAAGGATGCAGTATT
GTTTTGCTGACACAAACCAGTCTTTACAATGTTGAACCATGTCGTGTGGAATACTCTGGAGTCT
ATGGCTAATGGGTGGGGCACTATAATTCGTATGGAGCAGGATCAAACTAACAAAATCAGTTACA
ACAACACTGTTTCTATTACAAAGGAATCCAAACAGTAATATTTTCTAGGGTTTAATTTCTTTAG
TGGATCATGTGAATCATACAAGACATCAATTGATGGTAAAACTTGGTCCTTCCTATGTCTATCA
AGATTCCCCCCTTTTCCATAAGCTTCCTTCTTGCTGCGCTGAGGTACACTTGAGCACAGTTGAC
ATGTTTAATCGCAATTTTGGGACACAGGCATACTCAACAGTCGGTACACCTGATTATATTGCTC
CAGAAGTGCTACTGAAGAAAGGATATGGAACGGAGTGTGACTGGTTAGGTTTCTTATCTTGTAA
ATTTCTTTAACTATTAGACTTGGTGATTCTATCACCCCCGTGCTTTCTGTACCTTGATGGATGC
TTGGTATCACTTCTTTTTCTTCTTTAGGTGGTCCCTTGGTGCTATTATGTATGAAATGCTAGTT
GGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124821561
Functional Information
Coding potential Y
Potential coding position 162351477-162351594(+)
162351403-162355212(-)
Potential amino acid sequence MDSVRSWFQKFQPRDKSKRPVVAARHGKDPGKPPMDDAPSSATKQRVAAAKQYIENHYKTQMKS
LQDRKERRWMLERKLQDAEVPVEEQNNILKHLEKKETEYMRLQRHKMGVEDFELLTIIGRGAFG
EVRLCREKVSKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYYSFQDEEFLYLI
MEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHNYVHRDIKPDNLLLDHSGHLKLS
DFGLCKPLDSSNFPNLNEPDYMSGKVTTPLPDTTRLSNPSAPRRTQQEQLSHWQKNRRMLAYST
VGTPDYIAPEVLLKKGYGTECDWWSLGAIMYEMLVGYPPFYSEDPMSTCRKIEGVVPTPQHLVP
RRVVDLGYLIRNLGLIESLDLFNICPVPAALLTIRGWPGSRDDSIVSGDGFCEKLVPEVPAERQ
IEEASGGCQTWKRSRKAPDGRCPF*(+)
MLKRSSDSISPKLRIRYPRSTTLRGTRCWGVGTTPSIFLQVDIGSSE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b