Plant Circular RNA Database

Detail information of orai.003G018700_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.003G018700_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000228
					
						Alias
						Chr03:1395457|1398345
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr03: 1395457-1398345  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.003G018700						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							orai.003G018700_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.003G018700.2:1
Gorai.003G018700.1:1

General Information
CircRNA Name	orai.003G018700_circ_g.1
ID in PlantcircBase	gra_circ_000228
Alias	Chr03:1395457\|1398345
Organism	Gossypium raimondii
Position	chrChr03: 1395457-1398345 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.003G018700
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	orai.003G018700_circ_g.2
Support reads	2
Tissues	ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.003G018700.2:1 Gorai.003G018700.1:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTCATGCTTCCAAGTTTTCCACTCAGAACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGA
CTTAACCTCATTCCATAGTATGGCATCATACAATTCctcaacatcaagatcaagagattgatca
agcgaagaatttgtaacataaatgaagttctcccaaggcatcgaggatctagcattttgctcat
tagaacta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2889
Transcript exons: 1395457-1398345
CTCAACATCAAGATCAAGAGATTGATCAAGCGAAGAATTTGTAACATAAATGAAGTTCTCCCAA
GGCATCGAGGATCTAGCATTTTGCTCATTAGAACTAAGACCAGAGATGTAAACGGAATCAAAAA
GCCCTTCATCCACTACACAAGCTACAGGAACTGATTCTTTCCCGAAGCTTAAATCATCACACAA
GATACTGGCCTTCTGCATGGGCCCTTTTTTGAAATGTTGTGAATCGATGATATAGTGACATTCA
TCCAGTTCCAACTCCTCATCTGCATCATCCAAGGAATCTGCTGATTGGCAACCCTCAAAACCAT
TAGGGAGAGGAATCAATGGGGACAGAAAATCTGGATCCTTGGCAGGTTTACATCCATTTATGCA
CACAAATTTCTCTTGATGCCACTCAACTTGAACGTTATGCTCACTGCAAAGCTTGGCTGCCTTA
AGGTACAAACATTCAGGTAACATGCCATACTTTTCTTCCAATGAGGCTTTAAGGCTCACTTTGC
AACAAGAAGAGCGAGCAATAGACAGAATGTCCAGGTTATTAGGCCGTGGTTTTGTTTTATGAGT
TCTGGAAAACAATATTTTTGCAAGGGCAGAGCACTGCGGTTCTGCTAATCTACCAAGATTTGAA
TTCTCCATAACATGAGGCTCTGCACTAATGATTTCAGCATCAATCAACTTTGATGCCTGGAGGC
GTTTTTTCATAGTAGCAGTTGCCCGATTCCTAATCCTATATGACACTGCCCCCAGACCTTTCTT
AAATCTAGGATGGCTAAGTCTCCCAGATTTTAGTTTATAAGCATAATAACGAACCCCTTTCTTT
GGAGGACGAGAGCTAGCTAAACTTGGTCCCATGTGAGCAGCCTGGTGGTGGCGGCCAAGATCAG
GCAGCAAATCAAATTTCAAGCCACAAAACCTGCAAATAAATTTTTGAACACTGCCTACATTCTC
TGAATTATTCTCCAAAGAAGCTGAATTTCCGAGCTCAAGTTTCAGTGGAGGTTCCTCACCCGCA
GATGGATTATGCTGTAGAGCAATCTTTGACAGCCTAAAATCAACAGGATGAGTGGACAGCACAT
GCAACCATAATTCCTCAGTATTGCCAAAATGGCTGCCACAGGAAATGCATCGTAGAAGCATGCA
CTGTTCGACAAATTGTACATGGTGCCTCTCCTGGACATGGGATTCCAAAACCTTCTTGTTAATA
AATGAATCCAGGCAGATTGCACAAGCATAACCTCTAAACAACCGTTGTGCTTCCTTTTTATGAT
TCTCCATCCAGTGTGTTCCAAGCTGCTGGTCATCAAGAAATTCCACAGAGCACATTTTGCACTT
AATAGTCTTGTCATCATCAAAGCTATCATTGATGGCCAATGGCAATGGAACAGGTTCTTCCATG
AAAGATGACGAAGGTGTACCTTTATCACCAGTGAAACCCCATAAACTTTGCAGTCTCTCCTTTT
CACTGTATACCAACTTCATTAACAATTCCCCAACTCTAAAGTCTTTTGATGCTTCAGAAAGGGC
CCACTGAAGTTGGACATCCACAGGAACAGGGTTTCTTAGAGATAAAATACTTTTGAAGAGCTTG
TAGAAAAGTTCACATGCTTGATGTAAATGCAATTTCTGCTCAAGTGAATCACAGTCTTTCAAAA
GATCTACAAACACCTCTCTGGATACTATCCTACTCTTTCCATTTCTTGCACGCTTGAGCCAGCT
TGGAAGGTGTTTATCACAGTATAATGAATGCCTCTTAGGACTTTCTTGACAAGGATCAAAACCA
TTATTGGAGTATAAGCCTATGCAATGCATTAATTCTGTGCCATCATGATCTTTACCAGAATGTT
CAGGCTTCTCGATTAAGCTGTTTCCTCTGTGCAAGGCATCAGCCTCAATTACCGATACTGGTTC
CACCTGCAAGGGACTTTCATTGTCTCCCACCAACACTATATCTCTGCATAATGTGGTTTCTGAA
CTCTGAATAATCTCCAGATGCTTCCTTTTCTGGGTGTGCTCTGGAGAATGGGAGCTATTATTTA
CATCACTTTTAGGTCTGTGTTTCTTGCAGAATGAGGAGCCATATAGCGACCGATGCTTACATCT
AGTACCAAGCACGGTGGTACCTTCACACATTGGTGTATCAACAGCGGGTGTCGCCTCTATTTTG
CTGAAGCTACCAGTAAAACGAGATGCCAAGTGCACACAACAATAAACATCCCCCTCATTTGCCC
ACCTCACACACTGCCTTCCTTTTGACTCTATGAACGCTGTGCACTGTCGGTTTTTACTCCCAGA
ATCTATGGATTTCTTAGCAACTGCTTCATTCACAGGTGTTAATTCCACTTCTTTAGGCTGAATG
TGCAGAGTTGAGGTAGTCTTGACCTCTTCACTTGCTGTTGTTATTTCAACATTCTTGGTGTGAA
TGACTTCCGGATGCCTTGCTTCAACAACAATATTATTCCATCTGTCAGTCAAACTATTTGACGT
GTCCATTGGTGTTGTTTCCTCTCTCTCATCTTCCTTTTTACAGTGTTGTGGCGTTGGTAAATTG
ACATCTACAGCATCTCGGTTACTAAAAAAATCAGAGTCAATTTCAACAGCCATAGTTTGATCCG
ACCCATTGCTTTGCACCATGGAGGCATGTGTATCTGCACGACGAACTTCAAGCTTGGCCCTCTT
CCTGCTAACTTGTATATTTGTGTTTGAGAGACCATCACTGCTCCGTTGATTGACATCTCCAGCA
GAAGATACCGGATGAGACGTCGAGAACCATTTCATAACTTCATGCTTCCAAGTTTTCCACTCAG
AACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGACTTAACCTCATTCCATAGTATGGCATC
ATACAATTC
						
					

						Genomic sequence
						
							CTCAACATCAAGATCAAGAGATTGATCAAGCGAAGAATTTGTAACATAAATGAAGTTCTCCCAA
GGCATCGAGGATCTAGCATTTTGCTCATTAGAACTAAGACCAGAGATGTAAACGGAATCAAAAA
GCCCTTCATCCACTACACAAGCTACAGGAACTGATTCTTTCCCGAAGCTTAAATCATCACACAA
GATACTGGCCTTCTGCATGGGCCCTTTTTTGAAATGTTGTGAATCGATGATATAGTGACATTCA
TCCAGTTCCAACTCCTCATCTGCATCATCCAAGGAATCTGCTGATTGGCAACCCTCAAAACCAT
TAGGGAGAGGAATCAATGGGGACAGAAAATCTGGATCCTTGGCAGGTTTACATCCATTTATGCA
CACAAATTTCTCTTGATGCCACTCAACTTGAACGTTATGCTCACTGCAAAGCTTGGCTGCCTTA
AGGTACAAACATTCAGGTAACATGCCATACTTTTCTTCCAATGAGGCTTTAAGGCTCACTTTGC
AACAAGAAGAGCGAGCAATAGACAGAATGTCCAGGTTATTAGGCCGTGGTTTTGTTTTATGAGT
TCTGGAAAACAATATTTTTGCAAGGGCAGAGCACTGCGGTTCTGCTAATCTACCAAGATTTGAA
TTCTCCATAACATGAGGCTCTGCACTAATGATTTCAGCATCAATCAACTTTGATGCCTGGAGGC
GTTTTTTCATAGTAGCAGTTGCCCGATTCCTAATCCTATATGACACTGCCCCCAGACCTTTCTT
AAATCTAGGATGGCTAAGTCTCCCAGATTTTAGTTTATAAGCATAATAACGAACCCCTTTCTTT
GGAGGACGAGAGCTAGCTAAACTTGGTCCCATGTGAGCAGCCTGGTGGTGGCGGCCAAGATCAG
GCAGCAAATCAAATTTCAAGCCACAAAACCTGCAAATAAATTTTTGAACACTGCCTACATTCTC
TGAATTATTCTCCAAAGAAGCTGAATTTCCGAGCTCAAGTTTCAGTGGAGGTTCCTCACCCGCA
GATGGATTATGCTGTAGAGCAATCTTTGACAGCCTAAAATCAACAGGATGAGTGGACAGCACAT
GCAACCATAATTCCTCAGTATTGCCAAAATGGCTGCCACAGGAAATGCATCGTAGAAGCATGCA
CTGTTCGACAAATTGTACATGGTGCCTCTCCTGGACATGGGATTCCAAAACCTTCTTGTTAATA
AATGAATCCAGGCAGATTGCACAAGCATAACCTCTAAACAACCGTTGTGCTTCCTTTTTATGAT
TCTCCATCCAGTGTGTTCCAAGCTGCTGGTCATCAAGAAATTCCACAGAGCACATTTTGCACTT
AATAGTCTTGTCATCATCAAAGCTATCATTGATGGCCAATGGCAATGGAACAGGTTCTTCCATG
AAAGATGACGAAGGTGTACCTTTATCACCAGTGAAACCCCATAAACTTTGCAGTCTCTCCTTTT
CACTGTATACCAACTTCATTAACAATTCCCCAACTCTAAAGTCTTTTGATGCTTCAGAAAGGGC
CCACTGAAGTTGGACATCCACAGGAACAGGGTTTCTTAGAGATAAAATACTTTTGAAGAGCTTG
TAGAAAAGTTCACATGCTTGATGTAAATGCAATTTCTGCTCAAGTGAATCACAGTCTTTCAAAA
GATCTACAAACACCTCTCTGGATACTATCCTACTCTTTCCATTTCTTGCACGCTTGAGCCAGCT
TGGAAGGTGTTTATCACAGTATAATGAATGCCTCTTAGGACTTTCTTGACAAGGATCAAAACCA
TTATTGGAGTATAAGCCTATGCAATGCATTAATTCTGTGCCATCATGATCTTTACCAGAATGTT
CAGGCTTCTCGATTAAGCTGTTTCCTCTGTGCAAGGCATCAGCCTCAATTACCGATACTGGTTC
CACCTGCAAGGGACTTTCATTGTCTCCCACCAACACTATATCTCTGCATAATGTGGTTTCTGAA
CTCTGAATAATCTCCAGATGCTTCCTTTTCTGGGTGTGCTCTGGAGAATGGGAGCTATTATTTA
CATCACTTTTAGGTCTGTGTTTCTTGCAGAATGAGGAGCCATATAGCGACCGATGCTTACATCT
AGTACCAAGCACGGTGGTACCTTCACACATTGGTGTATCAACAGCGGGTGTCGCCTCTATTTTG
CTGAAGCTACCAGTAAAACGAGATGCCAAGTGCACACAACAATAAACATCCCCCTCATTTGCCC
ACCTCACACACTGCCTTCCTTTTGACTCTATGAACGCTGTGCACTGTCGGTTTTTACTCCCAGA
ATCTATGGATTTCTTAGCAACTGCTTCATTCACAGGTGTTAATTCCACTTCTTTAGGCTGAATG
TGCAGAGTTGAGGTAGTCTTGACCTCTTCACTTGCTGTTGTTATTTCAACATTCTTGGTGTGAA
TGACTTCCGGATGCCTTGCTTCAACAACAATATTATTCCATCTGTCAGTCAAACTATTTGACGT
GTCCATTGGTGTTGTTTCCTCTCTCTCATCTTCCTTTTTACAGTGTTGTGGCGTTGGTAAATTG
ACATCTACAGCATCTCGGTTACTAAAAAAATCAGAGTCAATTTCAACAGCCATAGTTTGATCCG
ACCCATTGCTTTGCACCATGGAGGCATGTGTATCTGCACGACGAACTTCAAGCTTGGCCCTCTT
CCTGCTAACTTGTATATTTGTGTTTGAGAGACCATCACTGCTCCGTTGATTGACATCTCCAGCA
GAAGATACCGGATGAGACGTCGAGAACCATTTCATAACTTCATGCTTCCAAGTTTTCCACTCAG
AACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGACTTAACCTCATTCCATAGTATGGCATC
ATACAATTC
						
					

			
		

Sequences
Splice junction sequence	CTTCATGCTTCCAAGTTTTCCACTCAGAACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGA CTTAACCTCATTCCATAGTATGGCATCATACAATTCctcaacatcaagatcaagagattgatca agcgaagaatttgtaacataaatgaagttctcccaaggcatcgaggatctagcattttgctcat tagaacta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2889 Transcript exons: 1395457-1398345 CTCAACATCAAGATCAAGAGATTGATCAAGCGAAGAATTTGTAACATAAATGAAGTTCTCCCAA GGCATCGAGGATCTAGCATTTTGCTCATTAGAACTAAGACCAGAGATGTAAACGGAATCAAAAA GCCCTTCATCCACTACACAAGCTACAGGAACTGATTCTTTCCCGAAGCTTAAATCATCACACAA GATACTGGCCTTCTGCATGGGCCCTTTTTTGAAATGTTGTGAATCGATGATATAGTGACATTCA TCCAGTTCCAACTCCTCATCTGCATCATCCAAGGAATCTGCTGATTGGCAACCCTCAAAACCAT TAGGGAGAGGAATCAATGGGGACAGAAAATCTGGATCCTTGGCAGGTTTACATCCATTTATGCA CACAAATTTCTCTTGATGCCACTCAACTTGAACGTTATGCTCACTGCAAAGCTTGGCTGCCTTA AGGTACAAACATTCAGGTAACATGCCATACTTTTCTTCCAATGAGGCTTTAAGGCTCACTTTGC AACAAGAAGAGCGAGCAATAGACAGAATGTCCAGGTTATTAGGCCGTGGTTTTGTTTTATGAGT TCTGGAAAACAATATTTTTGCAAGGGCAGAGCACTGCGGTTCTGCTAATCTACCAAGATTTGAA TTCTCCATAACATGAGGCTCTGCACTAATGATTTCAGCATCAATCAACTTTGATGCCTGGAGGC GTTTTTTCATAGTAGCAGTTGCCCGATTCCTAATCCTATATGACACTGCCCCCAGACCTTTCTT AAATCTAGGATGGCTAAGTCTCCCAGATTTTAGTTTATAAGCATAATAACGAACCCCTTTCTTT GGAGGACGAGAGCTAGCTAAACTTGGTCCCATGTGAGCAGCCTGGTGGTGGCGGCCAAGATCAG GCAGCAAATCAAATTTCAAGCCACAAAACCTGCAAATAAATTTTTGAACACTGCCTACATTCTC TGAATTATTCTCCAAAGAAGCTGAATTTCCGAGCTCAAGTTTCAGTGGAGGTTCCTCACCCGCA GATGGATTATGCTGTAGAGCAATCTTTGACAGCCTAAAATCAACAGGATGAGTGGACAGCACAT GCAACCATAATTCCTCAGTATTGCCAAAATGGCTGCCACAGGAAATGCATCGTAGAAGCATGCA CTGTTCGACAAATTGTACATGGTGCCTCTCCTGGACATGGGATTCCAAAACCTTCTTGTTAATA AATGAATCCAGGCAGATTGCACAAGCATAACCTCTAAACAACCGTTGTGCTTCCTTTTTATGAT TCTCCATCCAGTGTGTTCCAAGCTGCTGGTCATCAAGAAATTCCACAGAGCACATTTTGCACTT AATAGTCTTGTCATCATCAAAGCTATCATTGATGGCCAATGGCAATGGAACAGGTTCTTCCATG AAAGATGACGAAGGTGTACCTTTATCACCAGTGAAACCCCATAAACTTTGCAGTCTCTCCTTTT CACTGTATACCAACTTCATTAACAATTCCCCAACTCTAAAGTCTTTTGATGCTTCAGAAAGGGC CCACTGAAGTTGGACATCCACAGGAACAGGGTTTCTTAGAGATAAAATACTTTTGAAGAGCTTG TAGAAAAGTTCACATGCTTGATGTAAATGCAATTTCTGCTCAAGTGAATCACAGTCTTTCAAAA GATCTACAAACACCTCTCTGGATACTATCCTACTCTTTCCATTTCTTGCACGCTTGAGCCAGCT TGGAAGGTGTTTATCACAGTATAATGAATGCCTCTTAGGACTTTCTTGACAAGGATCAAAACCA TTATTGGAGTATAAGCCTATGCAATGCATTAATTCTGTGCCATCATGATCTTTACCAGAATGTT CAGGCTTCTCGATTAAGCTGTTTCCTCTGTGCAAGGCATCAGCCTCAATTACCGATACTGGTTC CACCTGCAAGGGACTTTCATTGTCTCCCACCAACACTATATCTCTGCATAATGTGGTTTCTGAA CTCTGAATAATCTCCAGATGCTTCCTTTTCTGGGTGTGCTCTGGAGAATGGGAGCTATTATTTA CATCACTTTTAGGTCTGTGTTTCTTGCAGAATGAGGAGCCATATAGCGACCGATGCTTACATCT AGTACCAAGCACGGTGGTACCTTCACACATTGGTGTATCAACAGCGGGTGTCGCCTCTATTTTG CTGAAGCTACCAGTAAAACGAGATGCCAAGTGCACACAACAATAAACATCCCCCTCATTTGCCC ACCTCACACACTGCCTTCCTTTTGACTCTATGAACGCTGTGCACTGTCGGTTTTTACTCCCAGA ATCTATGGATTTCTTAGCAACTGCTTCATTCACAGGTGTTAATTCCACTTCTTTAGGCTGAATG TGCAGAGTTGAGGTAGTCTTGACCTCTTCACTTGCTGTTGTTATTTCAACATTCTTGGTGTGAA TGACTTCCGGATGCCTTGCTTCAACAACAATATTATTCCATCTGTCAGTCAAACTATTTGACGT GTCCATTGGTGTTGTTTCCTCTCTCTCATCTTCCTTTTTACAGTGTTGTGGCGTTGGTAAATTG ACATCTACAGCATCTCGGTTACTAAAAAAATCAGAGTCAATTTCAACAGCCATAGTTTGATCCG ACCCATTGCTTTGCACCATGGAGGCATGTGTATCTGCACGACGAACTTCAAGCTTGGCCCTCTT CCTGCTAACTTGTATATTTGTGTTTGAGAGACCATCACTGCTCCGTTGATTGACATCTCCAGCA GAAGATACCGGATGAGACGTCGAGAACCATTTCATAACTTCATGCTTCCAAGTTTTCCACTCAG AACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGACTTAACCTCATTCCATAGTATGGCATC ATACAATTC
Genomic sequence	CTCAACATCAAGATCAAGAGATTGATCAAGCGAAGAATTTGTAACATAAATGAAGTTCTCCCAA GGCATCGAGGATCTAGCATTTTGCTCATTAGAACTAAGACCAGAGATGTAAACGGAATCAAAAA GCCCTTCATCCACTACACAAGCTACAGGAACTGATTCTTTCCCGAAGCTTAAATCATCACACAA GATACTGGCCTTCTGCATGGGCCCTTTTTTGAAATGTTGTGAATCGATGATATAGTGACATTCA TCCAGTTCCAACTCCTCATCTGCATCATCCAAGGAATCTGCTGATTGGCAACCCTCAAAACCAT TAGGGAGAGGAATCAATGGGGACAGAAAATCTGGATCCTTGGCAGGTTTACATCCATTTATGCA CACAAATTTCTCTTGATGCCACTCAACTTGAACGTTATGCTCACTGCAAAGCTTGGCTGCCTTA AGGTACAAACATTCAGGTAACATGCCATACTTTTCTTCCAATGAGGCTTTAAGGCTCACTTTGC AACAAGAAGAGCGAGCAATAGACAGAATGTCCAGGTTATTAGGCCGTGGTTTTGTTTTATGAGT TCTGGAAAACAATATTTTTGCAAGGGCAGAGCACTGCGGTTCTGCTAATCTACCAAGATTTGAA TTCTCCATAACATGAGGCTCTGCACTAATGATTTCAGCATCAATCAACTTTGATGCCTGGAGGC GTTTTTTCATAGTAGCAGTTGCCCGATTCCTAATCCTATATGACACTGCCCCCAGACCTTTCTT AAATCTAGGATGGCTAAGTCTCCCAGATTTTAGTTTATAAGCATAATAACGAACCCCTTTCTTT GGAGGACGAGAGCTAGCTAAACTTGGTCCCATGTGAGCAGCCTGGTGGTGGCGGCCAAGATCAG GCAGCAAATCAAATTTCAAGCCACAAAACCTGCAAATAAATTTTTGAACACTGCCTACATTCTC TGAATTATTCTCCAAAGAAGCTGAATTTCCGAGCTCAAGTTTCAGTGGAGGTTCCTCACCCGCA GATGGATTATGCTGTAGAGCAATCTTTGACAGCCTAAAATCAACAGGATGAGTGGACAGCACAT GCAACCATAATTCCTCAGTATTGCCAAAATGGCTGCCACAGGAAATGCATCGTAGAAGCATGCA CTGTTCGACAAATTGTACATGGTGCCTCTCCTGGACATGGGATTCCAAAACCTTCTTGTTAATA AATGAATCCAGGCAGATTGCACAAGCATAACCTCTAAACAACCGTTGTGCTTCCTTTTTATGAT TCTCCATCCAGTGTGTTCCAAGCTGCTGGTCATCAAGAAATTCCACAGAGCACATTTTGCACTT AATAGTCTTGTCATCATCAAAGCTATCATTGATGGCCAATGGCAATGGAACAGGTTCTTCCATG AAAGATGACGAAGGTGTACCTTTATCACCAGTGAAACCCCATAAACTTTGCAGTCTCTCCTTTT CACTGTATACCAACTTCATTAACAATTCCCCAACTCTAAAGTCTTTTGATGCTTCAGAAAGGGC CCACTGAAGTTGGACATCCACAGGAACAGGGTTTCTTAGAGATAAAATACTTTTGAAGAGCTTG TAGAAAAGTTCACATGCTTGATGTAAATGCAATTTCTGCTCAAGTGAATCACAGTCTTTCAAAA GATCTACAAACACCTCTCTGGATACTATCCTACTCTTTCCATTTCTTGCACGCTTGAGCCAGCT TGGAAGGTGTTTATCACAGTATAATGAATGCCTCTTAGGACTTTCTTGACAAGGATCAAAACCA TTATTGGAGTATAAGCCTATGCAATGCATTAATTCTGTGCCATCATGATCTTTACCAGAATGTT CAGGCTTCTCGATTAAGCTGTTTCCTCTGTGCAAGGCATCAGCCTCAATTACCGATACTGGTTC CACCTGCAAGGGACTTTCATTGTCTCCCACCAACACTATATCTCTGCATAATGTGGTTTCTGAA CTCTGAATAATCTCCAGATGCTTCCTTTTCTGGGTGTGCTCTGGAGAATGGGAGCTATTATTTA CATCACTTTTAGGTCTGTGTTTCTTGCAGAATGAGGAGCCATATAGCGACCGATGCTTACATCT AGTACCAAGCACGGTGGTACCTTCACACATTGGTGTATCAACAGCGGGTGTCGCCTCTATTTTG CTGAAGCTACCAGTAAAACGAGATGCCAAGTGCACACAACAATAAACATCCCCCTCATTTGCCC ACCTCACACACTGCCTTCCTTTTGACTCTATGAACGCTGTGCACTGTCGGTTTTTACTCCCAGA ATCTATGGATTTCTTAGCAACTGCTTCATTCACAGGTGTTAATTCCACTTCTTTAGGCTGAATG TGCAGAGTTGAGGTAGTCTTGACCTCTTCACTTGCTGTTGTTATTTCAACATTCTTGGTGTGAA TGACTTCCGGATGCCTTGCTTCAACAACAATATTATTCCATCTGTCAGTCAAACTATTTGACGT GTCCATTGGTGTTGTTTCCTCTCTCTCATCTTCCTTTTTACAGTGTTGTGGCGTTGGTAAATTG ACATCTACAGCATCTCGGTTACTAAAAAAATCAGAGTCAATTTCAACAGCCATAGTTTGATCCG ACCCATTGCTTTGCACCATGGAGGCATGTGTATCTGCACGACGAACTTCAAGCTTGGCCCTCTT CCTGCTAACTTGTATATTTGTGTTTGAGAGACCATCACTGCTCCGTTGATTGACATCTCCAGCA GAAGATACCGGATGAGACGTCGAGAACCATTTCATAACTTCATGCTTCCAAGTTTTCCACTCAG AACCAAGTGTGGGCTGTACTGATGCATCTCCAAGAGACTTAACCTCATTCCATAGTATGGCATC ATACAATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.468125741

Conservation Information
Conserved circRNAs	NA
PMCS	0.468125741

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1398244-1395459(-)
1395594-1398242(-)
						
					

						Potential amino acid sequence
						
							MKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQTMAVEID
SDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTKNVEITT
ASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANEGDVYCC
VHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNSSHSPEH
TQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSGKDHDGT
ELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKDCDSLEQ
KLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKERLQSLWG
FTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKKEAQRLF
RGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLSTHPVDF
RLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLGRHHQAA
HMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQASKLIDA
EIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVSLKASLE
EKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFEGCQSAD
SLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDSVYISGL
SSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGSEWKTWK
HEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQTMAV
EIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTKNVE
ITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANEGDV
YCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNSSHS
PEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSGKDH
DGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKDCDS
LEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKERLQS
LWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKKEAQ
RLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLSTHP
VDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLGRHH
QAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQASKL
IDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVSLKA
SLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFEGCQ
SADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDSVYI
SGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGSEWK
TWKHEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQT
MAVEIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTK
NVEITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANE
GDVYCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNS
SHSPEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSG
KDHDGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKD
CDSLEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKER
LQSLWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKK
EAQRLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLS
THPVDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLG
RHHQAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQA
SKLIDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVS
LKASLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFE
GCQSADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDS
VYISGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGS
EWKTWKHEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGS
DQTMAVEIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVI
HTKNVEITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRW
ANEGDVYCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDV
NNSSHSPEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPE
HSGKDHDGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDL
LKDCDSLEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSE
KERLQSLWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMEN
HKKEAQRLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLH
VLSTHPVDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLP
DLGRHHQAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKR
LQASKLIDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCC
KVSLKASLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPN
GFEGCQSADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGL
FDSVYISGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVE(-)
MKGFLIPFTSLVLVLMSKMLDPRCLGRTSFMLQILRLINLLILMLRNCMMPYYGMRLSLLEMHQ
YSPHLVLSGKLGSMKL*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1398244-1395459(-) 1395594-1398242(-)
Potential amino acid sequence	MKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQTMAVEID SDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTKNVEITT ASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANEGDVYCC VHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNSSHSPEH TQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSGKDHDGT ELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKDCDSLEQ KLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKERLQSLWG FTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKKEAQRLF RGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLSTHPVDF RLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLGRHHQAA HMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQASKLIDA EIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVSLKASLE EKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFEGCQSAD SLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDSVYISGL SSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGSEWKTWK HEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQTMAV EIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTKNVE ITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANEGDV YCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNSSHS PEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSGKDH DGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKDCDS LEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKERLQS LWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKKEAQ RLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLSTHP VDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLGRHH QAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQASKL IDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVSLKA SLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFEGCQ SADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDSVYI SGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGSEWK TWKHEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGSDQT MAVEIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVIHTK NVEITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRWANE GDVYCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDVNNS SHSPEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPEHSG KDHDGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDLLKD CDSLEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSEKER LQSLWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMENHKK EAQRLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLHVLS THPVDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLPDLG RHHQAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKRLQA SKLIDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCCKVS LKASLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPNGFE GCQSADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGLFDS VYISGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVEELYDAILWNEVKSLGDASVQPTLGS EWKTWKHEVMKWFSTSHPVSSAGDVNQRSSDGLSNTNIQVSRKRAKLEVRRADTHASMVQSNGS DQTMAVEIDSDFFSNRDAVDVNLPTPQHCKKEDEREETTPMDTSNSLTDRWNNIVVEARHPEVI HTKNVEITTASEEVKTTSTLHIQPKEVELTPVNEAVAKKSIDSGSKNRQCTAFIESKGRQCVRW ANEGDVYCCVHLASRFTGSFSKIEATPAVDTPMCEGTTVLGTRCKHRSLYGSSFCKKHRPKSDV NNSSHSPEHTQKRKHLEIIQSSETTLCRDIVLVGDNESPLQVEPVSVIEADALHRGNSLIEKPE HSGKDHDGTELMHCIGLYSNNGFDPCQESPKRHSLYCDKHLPSWLKRARNGKSRIVSREVFVDL LKDCDSLEQKLHLHQACELFYKLFKSILSLRNPVPVDVQLQWALSEASKDFRVGELLMKLVYSE KERLQSLWGFTGDKGTPSSSFMEEPVPLPLAINDSFDDDKTIKCKMCSVEFLDDQQLGTHWMEN HKKEAQRLFRGYACAICLDSFINKKVLESHVQERHHVQFVEQCMLLRCISCGSHFGNTEELWLH VLSTHPVDFRLSKIALQHNPSAGEEPPLKLELGNSASLENNSENVGSVQKFICRFCGLKFDLLP DLGRHHQAAHMGPSLASSRPPKKGVRYYAYKLKSGRLSHPRFKKGLGAVSYRIRNRATATMKKR LQASKLIDAEIISAEPHVMENSNLGRLAEPQCSALAKILFSRTHKTKPRPNNLDILSIARSSCC KVSLKASLEEKYGMLPECLYLKAAKLCSEHNVQVEWHQEKFVCINGCKPAKDPDFLSPLIPLPN GFEGCQSADSLDDADEELELDECHYIIDSQHFKKGPMQKASILCDDLSFGKESVPVACVVDEGL FDSVYISGLSSNEQNARSSMPWENFIYVTNSSLDQSLDLDVE(-) MKGFLIPFTSLVLVLMSKMLDPRCLGRTSFMLQILRLINLLILMLRNCMMPYYGMRLSLLEMHQ YSPHLVLSGKLGSMKL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.003G018700_circ_g.1

Address

Any questions?

Supported by