Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07650_circ_g.5 |
ID in PlantcircBase | ath_circ_001173 |
Alias | At_ciR1145 |
Organism | Arabidpsis thaliana |
Position | chr1: 2363214-2363929 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G07650 |
Parent gene annotation |
Leucine-rich repeat transmembrane protein kinase |
Parent gene strand | - |
Alternative splicing | AT1G07650_circ_g.1 AT1G07650_circ_g.2 AT1G07650_circ_g.3 AT1G07650_circ_g.4 AT1G07650_circ_g.6 AT1G07650_circ_g.7 |
Support reads | 5/2 |
Tissues | leaf/root, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G07650.3:5 AT1G07650.2:5 AT1G07650.4:5 AT1G07650.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.177907833 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2363860-2363216(-) |
Potential amino acid sequence |
MRISDNNFTGPIPDFISNWTRILKLQMHGCGLDGPIPSSISSLTSLTDLRISDLGGKPSSFPPL KNLESIKTLILRKCKIIGPIPKYIGDLKKLKTLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNF TGPIPDFISNWTRILKLQMHGCGLDGPIPSSISSLTSLTDLRISDLGGKPSSFPPLKNLESIKT LILRKCKIIGPIPKYIGDLKKLKTLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIPDFI SNWTRILKLQMHGCGLDGPIPSSISSLTSLTDLRISDLGGKPSSFPPLKNLESIKTLILRKCKI IGPIPKYIGDLKKLKTLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIPDFISNWTRILK LQMHGCGLDGPIPSSISSLTSLTDLRISDLGGKPSSFPPLKNLESIKTLILRKCKIIGPIPKYI GDLKKLKT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |