Detail information of Os01g0182900_circ_igg.2


General Information
CircRNA Name Os01g0182900_circ_igg.2
ID in PlantcircBase osa_circ_000579
Alias NA
Organism Oryza sativa
Position chr1: 4389625-4391453  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0182900_circ_igg.1 EPlOSAG00000000571_circ_ig.1
Support reads 2
Tissues shoot, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCAGCCACTGGGGCACCTGCATCAGTTAGAGGGTTTAGGATGGCTGTTATCACCTCACTGAAA
CATTTTATCCCAAGTGATGACGACGCTCTTTCTCTGgttatggagaaactagccatgaaatgtg
gcgagggtcgtggacgagctcttgtcaggagaatagcagcagttgttcaaactgcaaaagtact
gggactcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATGGAGAAACTAGCCATGAAATGTGGCGAGGGTCGTGGACGAGCTCTTGTCAGGAGAATAG
CAGCAGTTGTTCAAACTGCAAAAGTACTGGGACTCCCATTTTCTGAAGCATTTGAGAAACAGCC
AATTGAACTTCTTCAGTTGCTTTCTCTGAAAGCTCAGGATTCTTTTGATGAAGCTAAATTTCTG
GTGGAGACACACACCATGCCTGCATCTAGCATTGCAAGAATTCTTGCTGATTCCTTTCTAAAGG
TACACCAACTACACCATCCTTTAAACACACTTCATTTTGGAGGAACAGCAAAGGCATTCTATAT
ATTGTCTAATGTGCTTTTAATATTTGGCAGGGGCTTTTAGCTGCACATCGTGGAGGTTATCTGG
ATTCCCAAAAGGAAGAAGGCCCTGCACCCCTGTTGTGGAGGTCTAGTGACTTCTTGAAGTGGGC
AAAGCTATGTCCATCAGAACCAGAAATTGGCCATGCTTTGATGCGTTTGGTTATGACTGGCCAT
GAAGTACCACATGCTTGCGAGGTTGTATGATCTTCTAAGTTACCAAGACAATACTGATTTGTAT
ACATGCAAATGCCATCTTCTAAGAAATATAACTTATCCAAACAGTGTTATGCAAAGTTCATGTT
TGACCCTTGATATATTATCAAGGTATAATATTTAATTAGTGTCAGTATGATTATGCCATAAATT
TGTTAATTTCAAAAAAAAAACATGCACATCAGTTTTATTCCACTCATAAAGTGACTAACTTATG
GAACTCAAGTAACATGCACTCAACTTGATGAGGTGTCGGTGTTTAAAGTGGTGGCTTATGGAAT
TATGGAACAAATCAGCTTAATAAAAACCAGTTGATTTGGAGTATTGGGATTTCAGTCCTTTTTT
GGTTCGTGCTTCTTGTGGCCTATGGGTAACAAGTATCTATTACTCTTGCGCATAACCTTATTTA
TTTCACTGCAGTATTGGAAGAAACAAGTTATAATTGTATAAGATCTGAAACTCACTGACTCACC
TGTATTTGCTTTAAACTGGCCAGTGCTGGCTAGTGCCCTGTTGATTGTGAAAGAATTTGCTAGT
TTCCACATTCTTTGCATCATATATTAGTAGGTTTATACTGAGCCACTTTTTAAGCCATTGCTTA
TATAGAGTGAAGTGAAGAACCAATTTCCTCATTTGAAAACTAGAAGTTATCCATCTTTGTCAGT
CTTGCGTTGTATTTAGTTCAGTATTCCTAGTGTTGTTAACTATAAGTTACTGACATTTGACTGT
GGCCTGTGGGTTGCTTGAAAGTAATCAAATTTGCAGAATACTGATATGCATGAGCCTTCGTTGG
TATTGATATGTTTGTGTTATCTTATGTAAACTTAATGTATCCAGGCTACTTAGCTACCATCAGA
TTGACTATGGTTTGGTTTGAATTTTACTGTTGTATGCTGTTCCCTTGCCGTCTCTGAACTTTCC
ATTTCAAATGTTTTGCAGGTTGAACTCCTAATACTGTCCTACCACTTCTACATGTCTTCTTCTT
GTCTCGATGGAGTGGATGTTCTAGTCACATTTGCAGCTAATAGAGTGGAGTCGTATGTGTCAGA
GGGGGATTTTTCTTGTTTAGCTCGCTTGATCACTGGAGTGAGCAATTTTCATTCCTTGAGCTTC
ATTCTTTCCATCCTTATAGAAAATGGACAATTGGAGTTGTTACTTCAAAAGTACTCTGCAACTG
ACTCAGCCACTGGGGCACCTGCATCAGTTAGAGGGTTTAGGATGGCTGTTATCACCTCACTGAA
ACATTTTATCCCAAGTGATGACGACGCTCTTTCTCTG
Conservation Information
Conserved circRNAs osi_circ_011281
PMCS 0.26619338
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017