Detail information of Os09g0436400_circ_g.3


General Information
CircRNA Name Os09g0436400_circ_g.3
ID in PlantcircBase osa_circ_039294
Alias NA
Organism Oryza sativa
Position chr9: 16054351-16058705  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0436400
Parent gene annotation PDZ/DHR/GLGF domain containing protein. (Os09t0436400-01)
Parent gene strand +
Alternative splicing Os09g0436400_circ_g.1 Os09g0436400_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0436400-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGCGGAGTGGCTATATCCATGTACGGACGATAGATGTGATGAAATTGTCGCGCCTGATCCGA
TAGTTATTCGAACCTGTGAAGATAGCTATTATTTACgagagttgttcagccatggcttggcctg
aggattggatcactgaaacatgaaaaactggatatccgtgaacaaatacatggaagcttctcca
acacaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGTTGTTCAGCCATGGCTTGGCCTGAGGATTGGATCACTGAAACATGAAAAACTGGATATC
CGTGAACAAATACATGGAAGCTTCTCCAACACAGGTGGCATTTATGTAAAAGAGGTGAATATCC
ATTCAATATATTCGACATACACCAGTTTGCTGCATTTTTGTTATAATATTTCTTTTTTTGTCCT
ATTTTCTTCATTACACTGCTTATTGGGACCAAAATTCAATTTCTCAGAAAGGAACCTTTAGTGT
AGGTGATCCAGCCCAGGACTCGGTTGATAAGAATTGGCTGTATTCCAATTACTCGCTTTTACTT
AAATTATATCTCAAGTCTAATCCATAGCAATAGCAAAATACATTTTTATAAGGCATGATTAACG
CAAGCAAGAACCATCAGTAAGCATCGATAAAAAATCATTAATTAAATAACTAGGGCACCATGGT
GCCTCTGTACACAGAAAGTAGGTATTTTTTTTTCCTAGGTATCATGCTATAGAAATTTGTTTCT
TTTTTGGTTCTGGGTATAAAGTTTAACCTGTTTAGAAGTTAGTTCAAGCAAGTTTGATATGAAC
TTTAGAACTATATATAACGCTTTCTTTTAGTGAGTGTTGGTTTGTAAGTATATGCTGATTTCTT
TATAAAAACAATGAATTCTTGAAAACTCTTTCAATTGAACTGTTGTACCCAAGGTTGTCATGTC
CTAAAGTCTAGTTGAGTCAGCCCTCTACAGACTTGCCTAACTATCAAAGACTAGTTGTTGAATG
ACTTGTCTTGGGCTAAATACTACATATGTACCAGTTGCCTCTATTAATATGATGTCCTCTCCTC
ACCTTTCCACCAGGCCTCTCCCAAGTGAGGCCCAGTTTGCTCCTTAGTGGCTCATTGTTTCTGC
CTTTGCTCCATAGCGTCTTCTGCTGTCAACAGTGGCGGAGCCATCGGGGGTGCCGGAGGGGGCC
AGCACCCCCCTATCCGACCCCCCCTCCTCTACGTATAAGACCAGGTATAAAGTGTCAGTTAGCC
CATTAGCAAATCTAGAAAAAACGTCAGCCAAGCAAGAAACATGATCTATAAAATTAATTAATGA
GAGAGATTAGAGAAGCAGCGAATGCCTCATGTTCATCACTTCAGTTTTGCACCCGTATGCGACA
GCGATGCACGCACGTCTCCGTCCTCCCATCCTGTCTTGCCGTTGAGCACGCACCGATGGCTGTG
GCCTGAGGTCTGATCTCTCTTACAATATAGCAATACCTAAATACATGACCTTTAGTTTATTTCC
TATCCCTAATCCATAGATTGTAGTCAGACTGAGTACTCAGTTTGTGATTTCTCATCTTTTCAAA
ATAAAATAGAAGATGCTTATTTGTGAGATTCTTGGTAGTTTACGTTGAAACGATTTAGCAATAA
CTAAGGACTAGTTTCAAACTGCCAGTGATATTATTAAAGAGCTAAAATTTAAGTTTTTTTTAAA
AGGACTAGTTTACGCGTTGATTGTTATCGACAGTGAATATTTGGCCTCATTTGCTATCGACACT
TGTTAGGTCCTATGGCTTATTCCTCAACACATCCCCCCCCCCCTTCACATCCTGGCTTCGCCAC
TGGCTGCCAACAAGTCAAGTTGCGGCCCTCAAGTTGTGCCTCCCTGGCTGTGTGTATACCCTAA
CAAAGAGAAATCTAAAAGTTATAGTCAAATCTTAGTTGAATGTGCACATTTGATGTCATGTTGC
CACCTTCAGCTTTCTTGTATTCCATAATCCAGACAACGACAATTCATGGGCCATTAAAAGACTT
CTTCCTTTCTTGCTTACAAGGTACCATGGCGGCCCATGTCTCTTAGTCCTATGCGTCTCTGAAA
TCACTATCTACTATTCATTGGTTCCTATTTTTGGCTTAGAGAATGGACAAGTATCCCAGTAGTT
TCGTTCCAGCAACATTTCAGTCTAAGGTACCTACAAGTGGGAACATGCTTACTAGTGGATTTAG
GGAGTTGTGATATTGGCATGGTTAGCTGTAAACTTTAATCCTTAAAAGAGGGTTAACTTGAGAT
GAGATGAACCTTCAAGGGGAGATCTGTTAATGGTGAATAATTTCATGCTTGCATTCCAGGCCTG
AGGAAGGGATGTAACACATATGATTGACATAGTTTCTGATATATTTAGGAGTATGGGAGTTGTT
ACCCTGTTTGTCTCGATTGGTGTCTATGCTGAGACAGTGAGACATAAAAGATGAATTTTGCTAT
GGTGTGCAACTATCTGAACTAGGAGTGATACTCCTGGGGTCGCTGTAGTTATTTTCTTGTACTA
ATATCACTCACATCCAATACATGAATGTGGCATTCCATAGAACACTTGCATAAGATGAGGCGAT
GAGAAGCAGCATGGTTTATGAATGAGTTTGATATTGATTGATAAAAAAATCAATGATAGAAAGT
TGGGTCATTGTACTGATCTGGTGAGGGGATCGTGTGGAAACTGGCAGATTACTTGTTTTGAATT
CAATGGATTATTTTAGTAGTGACCAGTCAATAGCCAGCGAACCACTACCTGGCCTTTTGTGTGG
GCGGTCTGGTTTCATATATAACACTCTGGTTGGTACTGTTCAATGGGTTCCCTTATGTGTATCT
CTTTTTTTAGGTTCGCTTTTATCTGAGATCATAGCTGCAATGTGGCAGAAAACTTTTCTGTTTT
CTGATGATGGACGGCCATTTTTTAACTGCTCCTATTGGTTCTCATACAAATTTCGATCATTTAT
CCAAATCATTTTTGTTGTTTTCCTCAAGATGGTATATTTAATTTAACTTGCAGAATCTATTTCG
TTGGCTATTTAAACATTCATAACTTTCTTGGTTAAATATTAGCTTTTCATAACTTTGTTTGAAC
AATGATAAAATGAGGTATCCATGTTAGCTTTGATGCCTTGTCAAGTGCTATGCTAAATCCTACT
TGAGTTAGAACAAAAAAAAGGCTTAGCATCTATCTTGTCCAAATAAGCGGGTTGACTGTGAACA
TAATTAGGGCTTCTATATTAATTTTTTGTGTAGTACTTACTTCAAAATTTACTCGATAGGTTTT
TGATGGATCCCCAGCAGCAGATTCTGGAATCAACGTTGGTGATGTTATTACCAAGCTTGATGGA
GTCGATCTATTCCATGCACAAGAGGTTCTGTTTCAAAAGTTCTTTGCCTGGAAATTCTAGTAGT
TAATCTTAAAATTGTTTTGGAAAATCAAACTGATTTTTCATTGTGGTTCTTCTGACTAAACCAT
TTGCATTTTGTCCCAAGCAAAATCTACTAGCCAAACTGTTATAGTGCTATTACCTGTTCCTTCC
ATTTTATTATTCACATCCAATAATTTTCACTATGTGAAAACTATACTGTTAAGAGTTCACTGTG
ATAATATATTGTTTTGGTGAACATGTGAAAGATATAAGTTCTTTTCATGATGTGAAGTTTCACT
GTTAGTAGATCGCTGCAGGATTCCAGGATGTAACAAAATGAAAAAAATCCAGTGCATGTGTATA
ATCTGTTGTAGCATAATGTTTACTTACTGCAGACTAGAGTTTTCTTTTCAGTGCATGCGGTCTT
TTTGTTGGATATTTTCTTCATAATTCAATTTAATATGTTTACTTTCACAAGTGAGTTACAACTT
ACAAGTTCAGAGTAAAACCTAGCATGATGACTTAGTGTTTTCCATCTTTTTGAAATAGCTCAAT
TAGTATCTGGTACCATTGCAATAATCTTAATTTGCATGTCTGCATTTTTTTTGGGTACCATTTA
TTTTGTAATGTAGGCAATAGAAGTCAAAATGTGTTGGTAAGATAAGGTAGTAACGATGTCTTTA
CTTGCTGTATGTATGCAAAACAGAATAATACATGTTTGCATAGTTTCCCTTTTTGATGGATTTC
AGCTCTAATTTTTCTTATCAGTTCTATGAGCTTATTTTGGGGAAATCAGAAGATATTTTGCGAC
GTGATGAAGAGATGCTTTTCAAGGTTAGCTGCAGTGCATGTTCTAAGGATTTGTTAATTGTTAT
AACATGCGTACATTAATTATTTTTTATGACATTCTATTGCATATATGGAATAGGTGTCTATTCT
AAGGCCAAGTAACGGTTTAACCTTCCGTGCAATTGTCAATGCTGAAGTGGTTGACATGAGTAGG
AAGAACAGGTTTATCCTAACGCTCTACAGCTAGTCTTGCAAATTTATGTTCTAATGTTTGTATT
ATGTCTCTTAATTGACAGATGGCCTGTACCTAAGGCGGAGTGGCTATATCCATGTACGGACGAT
AGATGTGATGAAATTGTCGCGCCTGATCCGATAGTTATTCGAACCTGTGAAGATAGCTATTATT
TAC
Conservation Information
Conserved circRNAs NA
PMCS 0.199819902
Functional Information
Coding potential Y
Potential coding position 16058331-16054376(+)
Potential amino acid sequence MLFKVSILRPSNGLTFRAIVNAEVVDMSRKNRWPVPKAEWLYPCTDDRCDEIVAPDPIVIRTCE
DSYYLRELFSHGLA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017