Detail information of BGIOSGA032080_circ_g.1


General Information
CircRNA Name BGIOSGA032080_circ_g.1
ID in PlantcircBase osi_circ_008876
Alias Chr10:12882358_12884135(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9168583-9170360  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032080
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032080_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA032080-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTCTGCTAAGAATCGGACAAGCTCCTCATCGCTCCAAAATTTGCTTATGCTGGTGTTAAGT
AATGCTAACCCAGGAACTTTAGAAGACATGATTGTCcctggttgttccatgcagcattttgctc
ttctagttcagcaagatattgaaggtaaaattccttgcgttcattaggaacatttgcattcaga
catatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTGTTCCATGCAGCATTTTGCTCTTCTAGTTCAGCAAGATATTGAAGGTAAAATTCCTT
GCGTTCATTAGGAACATTTGCATTCAGACATATCTGCTTATCTCCAGCATTTAATATGTCGTCT
CCCTGAAAGAATATTGTACACAAATTCTTGTAGTCCTGTCAAAAATATAAAAGATATCAATCAA
CAACCCTGGAAAAAAAGCTTATATGCTATAGAAAAAAAAATGATATCAATCAACCACCATGGGT
TACCTGTGGTAGATTAGCTTCGTCATTCTGTTCAATCAGATATTCATCCATCACCCACCCAGTT
CTCTTACCAGATGGTGCTTCGCCTTCATAATGGTCCAGAGTAACTTTCATACCCACAATAACAG
TACTTGTCGGTATTCTAACAGTGCCAACAACTTTCCAGTATCCGGTTTTTGACTTTATAATAGC
ATTTTCTCCATTCTTAGGGGATTGTGGATCATCTGAAAAATTCATGTACCATATGTCCTCTGCA
AGAAAAGTTATCTCTGTCAGATTATCTTTTATTGAGGTTTAACAAGATAATAAGCCATTAAGCA
CCATTGTGGTTTTCATTGTAGGAATAGCTTAACTCTAGGATATAGCACCGCTGGTCACAGTGAA
CTGTGGACTTATGCTATGCAAAAAAGAGTAAACTTTAGTTCTGATACCTCAGAAAATTTGCAAT
CAAATCTTTATTGAAACCAGGCACCAGTTACCAATTTAAAACATGCAAGAATGTTATTAATATA
TGATTCCAGTAGATTTATGTACTATGTGTTATGATGTGGGATACTGAAGAGTGCAGAGACACAT
ATCAACAACTTAGGTGCACATTTTAGTGTGGAAAGTGAACTGAAGCCCCAAAATCTAAGCACAT
GATCTGCTTGTATAGTGACTCCAACTAAAAACAAAAGTTGATAATTAATTGCATATACTGAATT
CTGACATCTTCGAAAACTTAATTTTCACTTGGAAACAATGATTTTGCATAATTGGAGAATCTAG
TGAGGATGGCAGAGTAAGTTCTAGCCAAGCAACACATTGAACAGAATTTAATCATCAAAGAGTG
TACTTCATACTTTTCCAGCAAAAGCAGGCAAGCAATTGGTGCACAAGCTAAGAAAAATGAAAAA
CAAAATGCTCAATTTAATGTGAAGTGCCAAACTATTTCTCATATAACATCCTGCTATAGTTTAT
GAGCACTTCATGCTGGCAATTTGTGCCATAATCAATGGGGCAGAAGTATGTGTTCCTGCACTTA
ACATGGCACTTTCATCAGAGCTCAAAATATTTCTTTCTGGCATTGCATAAAATATTGTTTATGC
CTTTCAACCCTAAATAGTTATCAATTCTATGCAGAATTCATTTTCTTTAGTTGTCTATTGAGAA
TTAAAATGTTGCGATACTGCTCAACCATACAATACAATGCTGTAAAGTAAGTATATAACAAATC
AAAAAGGACAAAACAAAGAAGCCTTCAGGGTCCATAATGACTGAATTATGAAAGTCAGACCACA
AATTCCACATATGCCATAATCTTGTTGGAAAATACCATTAATTATCCTGTGTATAGATTGGATG
CAAACCTGAGTTACGTGGATCAATGAGAGAAATGTTCATTCCCACAAATACATTCTCTGGCAGA
GAGTGTGCTTCTTTCCTCTCTGCTAAGAATCGGACAAGCTCCTCATCGCTCCAAAATTTGCTTA
TGCTGGTGTTAAGTAATGCTAACCCAGGAACTTTAGAAGACATGATTGTC
Conservation Information
Conserved circRNAs osa_circ_006582
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021