Plant Circular RNA Database

Detail information of Os12g0621100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os12g0621100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012364
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 26482761-26485834  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os12g0621100						
					
						Parent gene annotation
						
							Similar to Filamentous flower-like yabby protein (Fragment). (Os
12t0621100-01);Similar to Filamentous flower-like yabby protein 
(Fragment). (Os12t0621100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0621100-02:4
Os12t0621100-01:4

General Information
CircRNA Name	Os12g0621100_circ_g.1
ID in PlantcircBase	osa_circ_012364
Alias	NA
Organism	Oryza sativa
Position	chr12: 26482761-26485834 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os12g0621100
Parent gene annotation	Similar to Filamentous flower-like yabby protein (Fragment). (Os 12t0621100-01);Similar to Filamentous flower-like yabby protein (Fragment). (Os12t0621100-02)
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0621100-02:4 Os12t0621100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTGGGTTATTAATGTTTACTCAGGGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATT
AGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATgtgagtgtcccaggaaacagcatgctga
acatcgtgaccgtccggtgtgggcactgcacgaatctgctgtcagtgaacttgagaggactgat
gcactcag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATC
TGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCA
TCATCTCCAGGTTTAATTAATTAATTATTAATCATAAATATTTCACCCAATGAATATATAGTAG
GTGATGTGCCTACACTTGTTGTCTGAGTTGTCTCTGCTATCCATTATCTGCATATATACATAAC
CACACACCACACAAATTATAGTACTATAATTTCTGTAAGAGACTGTAATTAACCATCGTATCAG
TTAACCACCAACAAGCTAAGCTAATTAGCTAGGACAGATTAATACGTATGTACTTGTGTGATCG
ATTGTGACATGTCATTGCACGCCAAGCTCCTATAGCAAATAGTAGCTTTTGTTGTTGTTGTTGA
TGATGTGTTGCTAGCTAGCAGAAAAAAGGCTACTGTAGATATGCCGATCGATGCTGCCAAGCAT
GCACAAGTCATGTCTACAGTGATTCTCATTACTCATGCTATGTTGCTAGTAGCTAGCAAAACAA
CAAGTTAATCTAACTACTGTAGCTCATATAGCTAGGCATCTATCTACAAGAACAACTTTGCATG
TTTTACTGCACGCATGCATGCATAGATATGAATATCCATGCAAATATGACCAATTAATTTATGG
AGCTATGCATATGGACGCATACCTGTGTTTTACACTTTTTAATTTACTCCATATATCTAAATAC
TTAAATAAATTAGATAACAGCGCCCTCCATCCTAAAATGTACTCAATCCTTTCTAAAATGTAGC
AACGTATTGTCTATTATTCAGTACTATAGATTACAATATTTTGATATGAATGGATACATAGTAA
CTTGTTCAGATTTAAATCTGAACAAATTTGTAGCTAATAGTTACTGCCCTTTAGCACACTGGTG
GAGAAAGGGTTATTACTATCGGTTCGTAACCCTCCTATAGTCCCGGTTTTTGAACCGGGACTAC
GAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTAAAAAAATTGGGAGTAAAAATCCATT
TTTAGTCCCGGTTGGTAACATCAACCGGGATTAAAGATAAAGCATCTTTAGTCCCGGTTGGTGT
TACCAACCGGGACTAAAGAGGCTAATCCGGTTGCTCTTTCCGGTTCCTCTTTATTATTTTCTTT
TCTTCATTATTTTTAAATATATTGATTTCACCCCATTCCATCCCCAAAATCCCAAATCAATCAT
CCTCAAATTGCCTCCAAATCCACAAATCGATCATCTCAAATACTCAAATACATCACAAAATCTT
AAAAAAAATACATCACAACTTCTACAAAATTCATCACATATTCACATCACACACAAATCAAATA
CATCACACAATAATCTCAGATCCAATCAAATACATTCACACAACAATCTCAGATTCTTCAAAAA
AAAAGAAAAAGAAAAAAAAGAGGAGAAGACGCGCGGCGAGGCACCGCCGCCGCGCCGGCTGGCC
GGCCAGCCCTCCGCGCCCCGCCGCCGCGCGGCCGCCCACCACTGCCGCGCCGGCTGGCCGGCCG
GCCCTCCCTCCGCGCCCCGCCGCCAGCTGCCGCCGCGCCGCCGTGCCGGCCGGCCGGCCCACCG
CGCCCCGCCGCCGCGCCGGCCGGCCGCCGCCACAAGCCGCCGCCTCACCGCGCACCGCGCCGGC
CGGCCAGCCCTCGGCGACCTGCCGCCCTCGCGCCGGCTTGGCAGTAGAGAGGAGAAGGAGAGGA
GAAGAAGAGGAGAAGAATAGAGATAAGAATGAGAAGAGGAGATAAGGTTGAAGAGATGAGTTAA
AAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAAAGGTGTTAAAGGAGAGGAGGAGGTACCTCA
ATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACC
GGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGAT
CTTTTTTCCTGGTTGATGTTATCAACCGGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACA
CCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTA
GTCCCGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAAAGATGGTTTCT
CCACCAGTGGCATGATGAAGCGAGTATAAACATATTAATGTTAGATTTGTTTTGATTAGTAGTT
TTGATCAGTCTTTAATTATACTGCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGG
CTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCT
GCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCGTA
AGTTAATTAATTGCATCGATCTCCTTATATATTCTTTTCCTTATTCATTTCCCTTTTTTTTTTC
TTGGCCTGAACCATGAAAATGTACATGCATATATACATACGATCATGAATATTGATCGACGTCC
ATAGTTAATTACTTTCATTGATGTTGATTAACAAGGGATGGGTATATATATTAATCGATACATG
TGCTGACCATATATATACTCCAAGTAATGTAATGCATGTGATCGAGTTACTGGTTTTAATCCTC
CAATATAAATATTTATTTCTACATCCTGGCCATCGTATACCTTCAGCCTGTAACAGATTTATTA
AGTTAGTTTTTTCATACTATATATGAAAACAGCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCC
TATAACAGATTTATTAAGTGAGTTTTTTTTTTCACTTTACTTTCTGTTCATGCGTTCTCTGGAT
AAATTGTTAGCTATAGTTGACTGAAGCATCTGTGGGTTATTAATGTTTACTCAGGGAAGAGATA
CGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGA
AT
						
					

			
		

Sequences
Splice junction sequence	TGTGGGTTATTAATGTTTACTCAGGGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATT AGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATgtgagtgtcccaggaaacagcatgctga acatcgtgaccgtccggtgtgggcactgcacgaatctgctgtcagtgaacttgagaggactgat gcactcag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATC TGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCA TCATCTCCAGGTTTAATTAATTAATTATTAATCATAAATATTTCACCCAATGAATATATAGTAG GTGATGTGCCTACACTTGTTGTCTGAGTTGTCTCTGCTATCCATTATCTGCATATATACATAAC CACACACCACACAAATTATAGTACTATAATTTCTGTAAGAGACTGTAATTAACCATCGTATCAG TTAACCACCAACAAGCTAAGCTAATTAGCTAGGACAGATTAATACGTATGTACTTGTGTGATCG ATTGTGACATGTCATTGCACGCCAAGCTCCTATAGCAAATAGTAGCTTTTGTTGTTGTTGTTGA TGATGTGTTGCTAGCTAGCAGAAAAAAGGCTACTGTAGATATGCCGATCGATGCTGCCAAGCAT GCACAAGTCATGTCTACAGTGATTCTCATTACTCATGCTATGTTGCTAGTAGCTAGCAAAACAA CAAGTTAATCTAACTACTGTAGCTCATATAGCTAGGCATCTATCTACAAGAACAACTTTGCATG TTTTACTGCACGCATGCATGCATAGATATGAATATCCATGCAAATATGACCAATTAATTTATGG AGCTATGCATATGGACGCATACCTGTGTTTTACACTTTTTAATTTACTCCATATATCTAAATAC TTAAATAAATTAGATAACAGCGCCCTCCATCCTAAAATGTACTCAATCCTTTCTAAAATGTAGC AACGTATTGTCTATTATTCAGTACTATAGATTACAATATTTTGATATGAATGGATACATAGTAA CTTGTTCAGATTTAAATCTGAACAAATTTGTAGCTAATAGTTACTGCCCTTTAGCACACTGGTG GAGAAAGGGTTATTACTATCGGTTCGTAACCCTCCTATAGTCCCGGTTTTTGAACCGGGACTAC GAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTAAAAAAATTGGGAGTAAAAATCCATT TTTAGTCCCGGTTGGTAACATCAACCGGGATTAAAGATAAAGCATCTTTAGTCCCGGTTGGTGT TACCAACCGGGACTAAAGAGGCTAATCCGGTTGCTCTTTCCGGTTCCTCTTTATTATTTTCTTT TCTTCATTATTTTTAAATATATTGATTTCACCCCATTCCATCCCCAAAATCCCAAATCAATCAT CCTCAAATTGCCTCCAAATCCACAAATCGATCATCTCAAATACTCAAATACATCACAAAATCTT AAAAAAAATACATCACAACTTCTACAAAATTCATCACATATTCACATCACACACAAATCAAATA CATCACACAATAATCTCAGATCCAATCAAATACATTCACACAACAATCTCAGATTCTTCAAAAA AAAAGAAAAAGAAAAAAAAGAGGAGAAGACGCGCGGCGAGGCACCGCCGCCGCGCCGGCTGGCC GGCCAGCCCTCCGCGCCCCGCCGCCGCGCGGCCGCCCACCACTGCCGCGCCGGCTGGCCGGCCG GCCCTCCCTCCGCGCCCCGCCGCCAGCTGCCGCCGCGCCGCCGTGCCGGCCGGCCGGCCCACCG CGCCCCGCCGCCGCGCCGGCCGGCCGCCGCCACAAGCCGCCGCCTCACCGCGCACCGCGCCGGC CGGCCAGCCCTCGGCGACCTGCCGCCCTCGCGCCGGCTTGGCAGTAGAGAGGAGAAGGAGAGGA GAAGAAGAGGAGAAGAATAGAGATAAGAATGAGAAGAGGAGATAAGGTTGAAGAGATGAGTTAA AAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAAAGGTGTTAAAGGAGAGGAGGAGGTACCTCA ATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACC GGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGAT CTTTTTTCCTGGTTGATGTTATCAACCGGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACA CCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTA GTCCCGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAAAGATGGTTTCT CCACCAGTGGCATGATGAAGCGAGTATAAACATATTAATGTTAGATTTGTTTTGATTAGTAGTT TTGATCAGTCTTTAATTATACTGCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGG CTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCT GCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCGTA AGTTAATTAATTGCATCGATCTCCTTATATATTCTTTTCCTTATTCATTTCCCTTTTTTTTTTC TTGGCCTGAACCATGAAAATGTACATGCATATATACATACGATCATGAATATTGATCGACGTCC ATAGTTAATTACTTTCATTGATGTTGATTAACAAGGGATGGGTATATATATTAATCGATACATG TGCTGACCATATATATACTCCAAGTAATGTAATGCATGTGATCGAGTTACTGGTTTTAATCCTC CAATATAAATATTTATTTCTACATCCTGGCCATCGTATACCTTCAGCCTGTAACAGATTTATTA AGTTAGTTTTTTCATACTATATATGAAAACAGCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCC TATAACAGATTTATTAAGTGAGTTTTTTTTTTCACTTTACTTTCTGTTCATGCGTTCTCTGGAT AAATTGTTAGCTATAGTTGACTGAAGCATCTGTGGGTTATTAATGTTTACTCAGGGAAGAGATA CGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGA AT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.227184681

Conservation Information
Conserved circRNAs	NA
PMCS	0.227184681

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26482783-26485831(+)
26485246-26482761(+)
26482794-26485642(-)
						
						Potential amino acid sequence
						
							MLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSS
SKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREA
FSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQ
SGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIR
RIKANNPDISHREAFSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHH
HLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQR
VPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRG
LMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQL
EQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKN(+)
MLALQRRGKGYLQPITDLLRKRYEGSKQTTPTLATGKPSAQQPRM*(+)
MFSMLFPGTLTFLAAVLKASLWLMSGLFALILRISSLINLL*(-)
						
						Sponge-miRNAs
						
							osa-miR5543 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26482783-26485831(+) 26485246-26482761(+) 26482794-26485642(-)
Potential amino acid sequence	MLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSS SKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREA FSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQ SGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIR RIKANNPDISHREAFSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHH HLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQR VPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNVSVPGNSMLNIVTVRCGHCTNLLSVNLRG LMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQL EQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKN(+) MLALQRRGKGYLQPITDLLRKRYEGSKQTTPTLATGKPSAQQPRM(+) MFSMLFPGTLTFLAAVLKASLWLMSGLFALILRISSLINLL(-)
Sponge-miRNAs	osa-miR5543
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0621100_circ_g.1

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