Detail information of BGIOSGA009022_circ_g.1


General Information
CircRNA Name BGIOSGA009022_circ_g.1
ID in PlantcircBase osi_circ_004261
Alias 2:32877855|32883429
Organism Oryza sativa ssp. indica
Position chr2: 32877855-32883429  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009022
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA009022_circ_g.2 BGIOSGA009022_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA009022-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACAAGGTCCTTTTGGATCTGAAGCCTTCTCAACTTGCAGCAATATGTGGAAGTTTAGTGTC
AGAAGGGATCAAACTTCGTCCCTGGAAAAACAGCAGgaatacgtttggtgatcataatgttggt
cttcttacaggagattctgctattaacaaagatgctcagatcctgataatgacaacagagattc
tgcgtaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 32883377-32877866(+)
32877932-32883426(+)
Potential amino acid sequence MWKFSVRRDQTSSLEKQQEYVW*(+)
MTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSA
TVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNL
SSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLIRDTLSQLWEND
MLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLLRGVAA
HHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGRQLLTPNELF
QMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVLNLLAGSKVTHN
QKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYLSSEITDESIDR
KCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLVENDSPVAGKQK
VDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLKQLLLREDMM
WDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVECHKQQRKKVSQL
KKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARA
LDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSR
NTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSD
ISRGTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKF
ALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSK
HELTNMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELEL
KRFRMQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA
RTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLE
PLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAA
KEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIG
SLSSFADQKIVSLVENDSPVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLP
AVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDE
VERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTR
RIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLK
PSQLAAICGSLVSEGIKLRPWKNSRNTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSV
GMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQ
IHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEFYYVKGKR
KLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGC
DAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIE
ELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTV
GHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGR
TLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEI
SLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLVENDSPVAGKQKVDNEGQQYYPSYYV
ALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLC
MDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQ
KIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGET
AAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSRNTFGDHNVGLLTGD
SAINKDAQILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYC
PKEVQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMN
RKLRMSHFQNLSSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLI
RDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRES
AVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDA
GRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVL
NLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYL
SSEITDESIDRKCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLV
ENDSPVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRET
LKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVEC
HKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFL
QISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSE
GIKLRPWKNS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021