Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA009022_circ_g.1 |
ID in PlantcircBase | osi_circ_004261 |
Alias | 2:32877855|32883429 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 32877855-32883429 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA009022 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA009022_circ_g.2 BGIOSGA009022_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA009022-TA:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
32883377-32877866(+) 32877932-32883426(+) |
Potential amino acid sequence |
MWKFSVRRDQTSSLEKQQEYVW*(+) MTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSA TVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNL SSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLIRDTLSQLWEND MLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLLRGVAA HHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGRQLLTPNELF QMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVLNLLAGSKVTHN QKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYLSSEITDESIDR KCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLVENDSPVAGKQK VDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLKQLLLREDMM WDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVECHKQQRKKVSQL KKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARA LDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSR NTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSD ISRGTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKF ALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSK HELTNMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELEL KRFRMQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPA RTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLE PLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAA KEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIG SLSSFADQKIVSLVENDSPVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLP AVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDE VERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTR RIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLK PSQLAAICGSLVSEGIKLRPWKNSRNTFGDHNVGLLTGDSAINKDAQILIMTTEILRNMLYQSV GMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQ IHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEFYYVKGKR KLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGC DAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIE ELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTV GHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGR TLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEI SLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLVENDSPVAGKQKVDNEGQQYYPSYYV ALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLC MDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQ KIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGET AAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSRNTFGDHNVGLLTGD SAINKDAQILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVIYC PKEVQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKKFALVPLLDGKGKKMN RKLRMSHFQNLSSPKSEFYYVKGKRKLRTTENEQGNRSPLDISKQVQLSKHELTNMRRSQVPLI RDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDCEASEVELELKRFRMQYPDAIRES AVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTSVISSLSKRIDA GRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQTTYEGPEECCDVIFAGLEPLVSQFTASYGMVL NLLAGSKVTHNQKESDDIKVKRSGRTLEEARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYL SSEITDESIDRKCREELSEEDYAEISLLQKKLKYKDKDSVQHTIPAVFIGSLSSFADQKIVSLV ENDSPVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIKAVYKTGLPAVPSAEGGPLPRET LKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLNVPVLNSLSEDDEVERFSQEHQDAVEC HKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFTKEKIERLEARSRRLTRRIRQIEPTGWKEFL QISKVIQEARALDINTQVIYPLGETAAAIRGENELWLAMVLRNKVLLDLKPSQLAAICGSLVSE GIKLRPWKNS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |