Plant Circular RNA Database

Detail information of AT1G58190_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT1G58190_circ_g.1
					
						ID in PlantcircBase
						ath_circ_007894
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 21541600-21545425  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							AT1G58190						
					
						Parent gene annotation
						
							Receptor like protein 9
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						23
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G58190.1:3
AT1G58190.2:3
AT1G58190.4:2
AT1G58190.3:2

General Information
CircRNA Name	AT1G58190_circ_g.1
ID in PlantcircBase	ath_circ_007894
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 21541600-21545425 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRI
Parent gene	AT1G58190
Parent gene annotation	Receptor like protein 9
Parent gene strand	+
Alternative splicing	NA
Support reads	23
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G58190.1:3 AT1G58190.2:3 AT1G58190.4:2 AT1G58190.3:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGCGTCAATAATACTGTCTTACCGTTTATAAACACGGCTTCTTCGCTTAAAACTTTAATTCTTC
ATGGAAACAATATGGAAGGTACTTTTCCAATGAAAGagctaaaagacttgagtaatctagaact
gttggatctaagtgggaacttgctcaatggccctgtgccaggtactactaaagtttttattcac
ctctcatt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGCTAAAAGACTTGAGTAATCTAGAACTGTTGGATCTAAGTGGGAACTTGCTCAATGGCCCTGT
GCCAGGTACTACTAAAGTTTTTATTCACCTCTCATTCTCTTTTCAAATATTCATCTTAGTTAAC
CTTTGTCAAAAATATATATACTGATGGCAGGCTTGGCGGTTTTGCATAAGCTTCATGCTTTGGA
TTTAAGTGACAACACATTTTCTGGATCATTAGGAAGAGAAGGTATGTATCATGAAAATTAATTT
AACTATTATTATTACAGTTATTAACCTTTGAACCCAAAAAACAAAAAAAGAGAGTTTATATTCA
CGTGTTTGACAAAATATATGGATACGAGTTTATTTTTAGTATATACATGACAGTTCATCAAAAT
ATCCGTGAACAAAAGATGATATACAGCCAAACATTTTGTAAACCGGTCATTTTTCTAAAAAAAA
ATAGTTTCTTTAGCATTTTAGGAATTATATATATAGTAGTTTGCATATAAGTATTTTTTAAATT
ATTAATTTGTCAAATAATTTTTAAAAGAAAAAAAACATTCTAATCTTAATGTGCCTTTGCTTGT
CATTGTTATAGGACTTTGTCAATTAAAAAATTTGCAAGAGCTTGATTTGAGTCAAAACGAATTT
ACCGGTCCATTTCCTCAGTGTTTTAGTAGCTTAACCCAACTCCAAGTTCTTGATATGTCTTCAA
ACCAATTCAATGGGACGCTTCCATCTGTTATCAGCAATCTTGATTCTCTTGAGTATTTATCTCT
CTCAGATAATAAGTTTGAGGGTTTCTTCTCTTTCGATTTGATCGCCAACCTTTCTAAGCTCAAG
GTGTTCAAACTTTCATCAAAATCTAGTTTGCTGCATATAGAGTCAGAAATCTCCCTACAACTGA
AGTTTCGGTTGAGTGTTATTGATTTAAAATATTGCAACTTGGAAGCAGTTCCTAGCTTTCTTCA
ACAGCAGAAAGATTTGCGTCTAATTAATCTCTCCAACAACAAGTTGACCGGAATATCTCCATCT
TGGTTTTTGGAGAACTATCCAAAACTTCGAGTTTTGCTTTTATGGAACAACTCATTCACTATCT
TTCATCTTCCAAGACTACTTGTTCATAGTTTGCATGTTTTGGATCTATCAGTCAACAAGTTTGA
TGAATGGCTTCCCAACAATATCGGACATGTGCTTCCCAATATAAGTCACTTGAATCTTTCGAAT
AATGGGTTTCAAGGGAATTTGCCTTCTTCGTTTAGTGAGATGAAAAAGATCTTCTTCTTGGACT
TATCACATAATAACTTGTCAGGCAGTCTACCAAAGAAATTTTGCATTGGTTGTTCTTCATTAAG
TATTTTGAAGCTTTCATACAACAGATTTAGTGGCAAGATTTTCCCACAACCAATGAAGTTGGAG
TCGTTGAGGGTGTTGATTGCGGATAACAATCAATTTACCGAGATCACGGATGTGTTGATTCATT
CAAAGGGTTTAGTATTTCTCGAACTGTCGAATAATTCTCTACAAGGTGTCATCCCAAGTTGGTT
TGGAGGCTTTTATTTCTTGTATCTTTCGGTTTCGGATAATCTCCTAAATGGTACAATACCAAGC
ACCCTCTTTAACGTATCTTTCCAGCTTTTGGACCTCTCACGAAACAAGTTTTCCGGTAACTTGC
CTTCACACTTCAGTTTTCGGCATATGGGTTTGTTGTACCTCCATGATAATGAATTCAGTGGGCC
AGTTCCAAGTACATTGCTAGAAAATGTTATGTTACTCGATCTACGAAATAACAAGTTATCCGGC
ACTATCCCACGATTTGTCAGCAACCGATATTTTCTTTATCTTTTGTTGAGGGGTAACGCATTAA
CGGGTCATATCCCAACTAGTCTTTGTGAGCTAAAGAGCATCAGGGTTTTGGATCTTGCTAATAA
CAGATTGAATGGTTCGATACCTCCATGCCTTAACAATGTATCCTTTGGGAGGAGCTTAGACTAT
GAGATAGATCCTGACTTTGGATCATCATATGGCATGGTTAGAGCAGATCAAGAATTAGAGGAGT
CGTATTCTAGGTCCTTGGTTTTACCACTTGAGTTTGAGCTAGATTACTCAGGCTATTTGGACTT
CACAGTGGAATTTGCATCAAAGAGAAGATATGATTCTTACATGGGAGAAAGTTTCAAGTTCATG
TTTGGACTGGATTTTTCAAGTAATGAACTTATTGGTGAAATCCCGAGAGAGCTAGGAGATTTTC
AAAGAATACGTGCTTTGAATTTGTCTCACAATTCCTTGTCAGGTTTAGTACCTGAAAGCTTCTC
CAATCTAACAGATATAGAGAGCATTGATCTTTCGTTTAACGTGTTGCATGGACCAATACCTCAT
GACCTAACCAAGTTAGACTATATAGTTGTGTTTAATGTTTCATACAACAACCTCTCGGGCTTAA
TTCCAAGTCAAGGAAAGTTTTTAAGCTTGGATGTAACCAATTACATTGGTAATCCTTTTCTATG
TGGGACAACTATAAATAAAAGTTGCGATGATAACACTAGTGGTTTCAAGGAAATAGATTCTCAT
AGTGGAGATGACGAAACAGCAATCGATATGGAGACATTTTATTGGAGCCTCTTCGCCACATACG
GTATAACATGGATGGCATTTATTGTGTTTCTTTGCTTTGATTCACCTTGGCGCCAAGCATGGTT
TCGCCTTGTTAATGTGTTTGTCAGTTTTCTCAAATGTGTTTGATTTGGTGTTTTCAATGGTAAA
TCATTTCTTTTGTATTTACACTATGTAAATCAAGTTTGTTGTGCACTATATATTTGGAATCTCT
TTGTGAAAATGTTTTTGCTGGATTTAAATAGTCTTTTTGGTATTGAATAAAAAAACACACTTGA
AACTTAGCTAAACTACATAATAGATCAAAGTCAAAGCTCTACGCCAAAGATTCCTTGATCCCTT
TGAGTTTAAGTATAGAGTTGACTTAAGTCTATTTAAAATAAAACTAGTCAAAGTCTTCTGCCAA
GATTCTTCAGTAAAGTCAAAATCTTCCGCCAAAGTCTCCACTCATTATGCCATCATAATTCTTT
GCCAGGTCGAGATAAATCTGAATCTTGAGAATAGTTCTTTTATTTAACAAAAAAAGTTAGGAAT
AGTTCCTAATGTCAAATTAGAACAATGTTAATGATGTTCTCTCCAGCATTTGTAATGGTAATGG
ACCTAATGGTGCTGGTTATGATGATAATGATGATGGTATCATCGCTGGATGCGCATGGGCATAT
AAGTTGCATCGAAAGCGAAAGGAAAGGACTGCTAGAGCTCAAGGCATATCTCAACATATCCGAG
TACCCGTATGATTGGCCTAATGACACGAACAACAGCGACTGTTGCAAATGGGAAAGAGTCAAGT
GTGATCTTACCAGCGGGCGTGTGATTGGTCTTCTCTTGACTGACACATACTATCCTCCTCCCCT
ACTAAATCTTTCCTTGTTCTATCCATTTGGAGAATTACAAACTCTTAATTTAAGTAATTTCTGG
TGTCAAGGCTGGTTCGATCATATCCATGGTATATAAATGATCTTTTACTTCCCTTTCTATTAAC
AACTTTTTAGTCTATTTTTTTCATGAACACATAATTATAAGCCATCGTCATTTTCAAGTTAACA
TCATTGGGTTTTATACATGCAGGTTATAAAAGCTTTGAGAGATTGAAAAATCTTGAGATCCTTG
ATATTAGTGAAAACGGCGTCAATAATACTGTCTTACCGTTTATAAACACGGCTTCTTCGCTTAA
AACTTTAATTCTTCATGGAAACAATATGGAAGGTACTTTTCCAATGAAAG
						
					

			
		

Sequences
Splice junction sequence	GGCGTCAATAATACTGTCTTACCGTTTATAAACACGGCTTCTTCGCTTAAAACTTTAATTCTTC ATGGAAACAATATGGAAGGTACTTTTCCAATGAAAGagctaaaagacttgagtaatctagaact gttggatctaagtgggaacttgctcaatggccctgtgccaggtactactaaagtttttattcac ctctcatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGCTAAAAGACTTGAGTAATCTAGAACTGTTGGATCTAAGTGGGAACTTGCTCAATGGCCCTGT GCCAGGTACTACTAAAGTTTTTATTCACCTCTCATTCTCTTTTCAAATATTCATCTTAGTTAAC CTTTGTCAAAAATATATATACTGATGGCAGGCTTGGCGGTTTTGCATAAGCTTCATGCTTTGGA TTTAAGTGACAACACATTTTCTGGATCATTAGGAAGAGAAGGTATGTATCATGAAAATTAATTT AACTATTATTATTACAGTTATTAACCTTTGAACCCAAAAAACAAAAAAAGAGAGTTTATATTCA CGTGTTTGACAAAATATATGGATACGAGTTTATTTTTAGTATATACATGACAGTTCATCAAAAT ATCCGTGAACAAAAGATGATATACAGCCAAACATTTTGTAAACCGGTCATTTTTCTAAAAAAAA ATAGTTTCTTTAGCATTTTAGGAATTATATATATAGTAGTTTGCATATAAGTATTTTTTAAATT ATTAATTTGTCAAATAATTTTTAAAAGAAAAAAAACATTCTAATCTTAATGTGCCTTTGCTTGT CATTGTTATAGGACTTTGTCAATTAAAAAATTTGCAAGAGCTTGATTTGAGTCAAAACGAATTT ACCGGTCCATTTCCTCAGTGTTTTAGTAGCTTAACCCAACTCCAAGTTCTTGATATGTCTTCAA ACCAATTCAATGGGACGCTTCCATCTGTTATCAGCAATCTTGATTCTCTTGAGTATTTATCTCT CTCAGATAATAAGTTTGAGGGTTTCTTCTCTTTCGATTTGATCGCCAACCTTTCTAAGCTCAAG GTGTTCAAACTTTCATCAAAATCTAGTTTGCTGCATATAGAGTCAGAAATCTCCCTACAACTGA AGTTTCGGTTGAGTGTTATTGATTTAAAATATTGCAACTTGGAAGCAGTTCCTAGCTTTCTTCA ACAGCAGAAAGATTTGCGTCTAATTAATCTCTCCAACAACAAGTTGACCGGAATATCTCCATCT TGGTTTTTGGAGAACTATCCAAAACTTCGAGTTTTGCTTTTATGGAACAACTCATTCACTATCT TTCATCTTCCAAGACTACTTGTTCATAGTTTGCATGTTTTGGATCTATCAGTCAACAAGTTTGA TGAATGGCTTCCCAACAATATCGGACATGTGCTTCCCAATATAAGTCACTTGAATCTTTCGAAT AATGGGTTTCAAGGGAATTTGCCTTCTTCGTTTAGTGAGATGAAAAAGATCTTCTTCTTGGACT TATCACATAATAACTTGTCAGGCAGTCTACCAAAGAAATTTTGCATTGGTTGTTCTTCATTAAG TATTTTGAAGCTTTCATACAACAGATTTAGTGGCAAGATTTTCCCACAACCAATGAAGTTGGAG TCGTTGAGGGTGTTGATTGCGGATAACAATCAATTTACCGAGATCACGGATGTGTTGATTCATT CAAAGGGTTTAGTATTTCTCGAACTGTCGAATAATTCTCTACAAGGTGTCATCCCAAGTTGGTT TGGAGGCTTTTATTTCTTGTATCTTTCGGTTTCGGATAATCTCCTAAATGGTACAATACCAAGC ACCCTCTTTAACGTATCTTTCCAGCTTTTGGACCTCTCACGAAACAAGTTTTCCGGTAACTTGC CTTCACACTTCAGTTTTCGGCATATGGGTTTGTTGTACCTCCATGATAATGAATTCAGTGGGCC AGTTCCAAGTACATTGCTAGAAAATGTTATGTTACTCGATCTACGAAATAACAAGTTATCCGGC ACTATCCCACGATTTGTCAGCAACCGATATTTTCTTTATCTTTTGTTGAGGGGTAACGCATTAA CGGGTCATATCCCAACTAGTCTTTGTGAGCTAAAGAGCATCAGGGTTTTGGATCTTGCTAATAA CAGATTGAATGGTTCGATACCTCCATGCCTTAACAATGTATCCTTTGGGAGGAGCTTAGACTAT GAGATAGATCCTGACTTTGGATCATCATATGGCATGGTTAGAGCAGATCAAGAATTAGAGGAGT CGTATTCTAGGTCCTTGGTTTTACCACTTGAGTTTGAGCTAGATTACTCAGGCTATTTGGACTT CACAGTGGAATTTGCATCAAAGAGAAGATATGATTCTTACATGGGAGAAAGTTTCAAGTTCATG TTTGGACTGGATTTTTCAAGTAATGAACTTATTGGTGAAATCCCGAGAGAGCTAGGAGATTTTC AAAGAATACGTGCTTTGAATTTGTCTCACAATTCCTTGTCAGGTTTAGTACCTGAAAGCTTCTC CAATCTAACAGATATAGAGAGCATTGATCTTTCGTTTAACGTGTTGCATGGACCAATACCTCAT GACCTAACCAAGTTAGACTATATAGTTGTGTTTAATGTTTCATACAACAACCTCTCGGGCTTAA TTCCAAGTCAAGGAAAGTTTTTAAGCTTGGATGTAACCAATTACATTGGTAATCCTTTTCTATG TGGGACAACTATAAATAAAAGTTGCGATGATAACACTAGTGGTTTCAAGGAAATAGATTCTCAT AGTGGAGATGACGAAACAGCAATCGATATGGAGACATTTTATTGGAGCCTCTTCGCCACATACG GTATAACATGGATGGCATTTATTGTGTTTCTTTGCTTTGATTCACCTTGGCGCCAAGCATGGTT TCGCCTTGTTAATGTGTTTGTCAGTTTTCTCAAATGTGTTTGATTTGGTGTTTTCAATGGTAAA TCATTTCTTTTGTATTTACACTATGTAAATCAAGTTTGTTGTGCACTATATATTTGGAATCTCT TTGTGAAAATGTTTTTGCTGGATTTAAATAGTCTTTTTGGTATTGAATAAAAAAACACACTTGA AACTTAGCTAAACTACATAATAGATCAAAGTCAAAGCTCTACGCCAAAGATTCCTTGATCCCTT TGAGTTTAAGTATAGAGTTGACTTAAGTCTATTTAAAATAAAACTAGTCAAAGTCTTCTGCCAA GATTCTTCAGTAAAGTCAAAATCTTCCGCCAAAGTCTCCACTCATTATGCCATCATAATTCTTT GCCAGGTCGAGATAAATCTGAATCTTGAGAATAGTTCTTTTATTTAACAAAAAAAGTTAGGAAT AGTTCCTAATGTCAAATTAGAACAATGTTAATGATGTTCTCTCCAGCATTTGTAATGGTAATGG ACCTAATGGTGCTGGTTATGATGATAATGATGATGGTATCATCGCTGGATGCGCATGGGCATAT AAGTTGCATCGAAAGCGAAAGGAAAGGACTGCTAGAGCTCAAGGCATATCTCAACATATCCGAG TACCCGTATGATTGGCCTAATGACACGAACAACAGCGACTGTTGCAAATGGGAAAGAGTCAAGT GTGATCTTACCAGCGGGCGTGTGATTGGTCTTCTCTTGACTGACACATACTATCCTCCTCCCCT ACTAAATCTTTCCTTGTTCTATCCATTTGGAGAATTACAAACTCTTAATTTAAGTAATTTCTGG TGTCAAGGCTGGTTCGATCATATCCATGGTATATAAATGATCTTTTACTTCCCTTTCTATTAAC AACTTTTTAGTCTATTTTTTTCATGAACACATAATTATAAGCCATCGTCATTTTCAAGTTAACA TCATTGGGTTTTATACATGCAGGTTATAAAAGCTTTGAGAGATTGAAAAATCTTGAGATCCTTG ATATTAGTGAAAACGGCGTCAATAATACTGTCTTACCGTTTATAAACACGGCTTCTTCGCTTAA AACTTTAATTCTTCATGGAAACAATATGGAAGGTACTTTTCCAATGAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.169620885

Conservation Information
Conserved circRNAs	NA
PMCS	0.169620885

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							21545401-21545422(+)
						
						Potential amino acid sequence
						
							MEGTFPMKELKDLSNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGYKSFERL
KNLEILDISENGVNNTVLPFINTASSLKTLILHGNNMEGTFPMKELKDLSNLELLDLSGNLLNG
PVPGLAVLHKLHALDLSDNTFSGSLGREGYKSFERLKNLEILDISENGVNNTVLPFINTASSLK
TLILHGNNMEGTFPMKELKDLSNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGRE
GYKSFERLKNLEILDISENGVNNTVLPFINTASSLKTLILHGNNMEGTFPMK(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	21545401-21545422(+)
Potential amino acid sequence	MEGTFPMKELKDLSNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGYKSFERL KNLEILDISENGVNNTVLPFINTASSLKTLILHGNNMEGTFPMKELKDLSNLELLDLSGNLLNG PVPGLAVLHKLHALDLSDNTFSGSLGREGYKSFERLKNLEILDISENGVNNTVLPFINTASSLK TLILHGNNMEGTFPMKELKDLSNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGRE GYKSFERLKNLEILDISENGVNNTVLPFINTASSLKTLILHGNNMEGTFPMK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G58190_circ_g.1

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