Detail information of BGIOSGA027511_circ_ig.1


General Information
CircRNA Name BGIOSGA027511_circ_ig.1
ID in PlantcircBase osi_circ_018283
Alias Chr08:5479843_5484499(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 5723950-5728607  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTGCAGAAAGTGCATCCACTGGGAGCTCAGACCAATCCCTATCGCTATCAGTATCAGGTAA
GGGGCTTGGCACCGCCTCCATCGTGCAAACAAGAGCccttcgccggcggcgagttacgcggcgg
cgtccgcatcttctactccgggcagcacagtggtgtagcaagggtttcgagctccaacgggaga
ctccgact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCGCCGGCGGCGAGTTACGCGGCGGCGTCCGCATCTTCTACTCCGGGCAGCACAGTGGTGT
AGCAAGGGTTTCGAGCTCCAACGGGAGACTCCGACTGAAGGTGAAGGGGCCTGGTTTATTTTTG
CCATTTTCACCTTTTTACCCCCCTCTCGAGTTGATCGGTGGAAGAACCTTCCGGATTCCTATTT
GTTTGACGTTTTTACCCTAGCACAGTGGTAGTGGTTTAAGCTTTGCTATTTGATTGTGTAGGAA
ATGAAATACTTTTAAAAATGTATTCTTTCCTTTCAACGATATGCAAAAATATGTACGACCCAGC
CAAACACGACCTCTTTTTTTTTCTTCCTTCCATTTTTTTTATTTGAATACCTTTCCTAAAATTT
TGGTATCTAGTCTCGTTGTTTAATCCTTAGCTTATTAGCCGCAGTAAAAAAAGTTGAATCTAAA
ATTTAGTTTTAGAGTTAATTTTAATTTTTAATCATAGTTTATTCTTTAGAAAAGCTCTTGAGTC
ATTAAAAATACATAAAAGCTTTGATCTATAAATTGTTTGATACTCCCTCCGTTCCAAAATACAT
ATAACCTTTCTTACCCTCACCTGCGCCCCATCGCCATGCCAGCTTGCTGGGCCAACCTCCTTCC
ATCCTCAACCCCACTTATCCCCCTCCCGTCTACCCCCGGTAGGCCTCATGCCGATGATAGCAGG
GACACCTCCCGTGCCCCCCCCCAATGCAGTATGAAGAATGACATAGCGAACTCGTGTAGCATCG
GAGACCGCAGGCGAGAAGGAAGAATTAGGTGGGGAGGCGACGCAGCCGGCGCTGAGGGTGAAGA
TGAGATAGCTCATCATGGCCATGCAACCAAGGTGGGCCACGGGCAACGCCCTCACGCCTCTCCC
AACGGCTACCGTCCTCCTCCCCCATCAACCGCCGCACACCTCTCCCGCCGTTCGCCACTTTTCT
TCCCACCCATCGTTGGCCGCATTGGATGCCTAGATTAACATGGGAAGAGAGGGGATAGAGGTGA
AACAAGATTGAGCTGCTCAAATGTGGGCTCACGTGGATTCCTCACTGACTTAGCTGCCATGTCA
GTTAAAACCGAGAACAATAATGTATTGGGACCCAATATAACCCATTTTAATAGAGAGAATCCCT
TATATACCACTCCAAATTAACCGGTTCCCTTATATGCCACTTTAAATTGGCTTCTCCCTTCTAT
GCCACCGGTTCAAGTTTGTCCTCCCTTTTATGCCATTGACGCCACTGCACCGCTAGTTGTCTAT
TAACTTCATAGTAAAAAGACGCATTTACCCTTGAGAGTTGGTATACAACCAATAATAAGTATTT
TAGTACTAATATAGCTACTGGATACAACATATGGAAATTGATTTTTTTTCATCACATGCAATTT
TAGCCATCACCATCACAAATAAATTTTCAATAAAAGCATGAAACGTGCAGTTTTTCAACAATAT
TTTTAATACAAAGAGCGTTCTTCACAGGATCTGACAAAATTTTGTTCACTCAAAAAGGATTTAA
AATAAATTAGTTATGATTTTTTGAAGTTTACACATTTTTTTCGTTGAGAGGGTATATTGGTCAT
TTATGAAAAAAAACTACCGTTTGACTAAAAGGGCATATTGCTGAAAGATTGCTGGGAGTGACAT
AAAAGGGTAAATAAACTTGAACCAGTGGCATATAAAGGAGAAGCCAATTTTGAGTGGCATATAA
GAGAATTGGCCAATTTCTAGTGGCATATAAGGGATTCTTTTTTTTTTATAAGATTAAAGATGCG
TTATATCTAGTATTCCGGTTTAGGGATGATTTTGAAACTCAACAGCAAGATGAGAGATCTTAAG
TGAACTACTTTCCTGAACTATTTGACTGCTGTCTTTTAATGGGCTGGATTCTTTTACATGCTAG
GCAATTGACAGCCTACAGGAGTACAAAGTCAACTGCTTACGCATGCATTTGAAATCTGTCAAAA
ATGGTTCCTTCAAAAAAAAATAAAAATCTTGAAAAATGTGGTTAATAACCGGCTTCTAGTATAA
TAACATTGCTGAAACATACAAAATTAGAAGAAAAAGATGAATCCGTAAAAAAAGAAGAGAAGGA
AACACTGCTAACAAGAGTTCAAGAGTCAGAAATATAACTGTACTGACATTGAAATGATCAGTAA
ATCAAGAGACACCAACGCAATACACTTGCACACCAAAGACTCGTTTGAACGTAGAAAGTTAAGC
AAATGCCGAACGGAAGAAATAATTGTTGAGAGTATGATGTTAATGAGATGAGCACAGCTCACAA
TACACTAACATAGCCATTATATTGCTTGCATACACATCTCCAGCTAACAGTCTAACAGATGCAG
GTAGAGACTCGTCCAACTACTACATAATAGTAAGCTTAAGCTAATAAAGCACACAGTTCATAAG
GTCATAGAAGCAGCATACCCTTTGCCAGCAAACCAAAAGGCCTACTACTACAGGTAAACAGGGT
GTATATCGCCACCATTCTAACCTCCCAAAACACTAATAAGGTACTGATAACAAATACTGCAGGT
GACACACCCTACGTTGGTTAAACAGCACGTACGCTGGGAAGATCATAGCTATTACTCCCTCCGT
TTCACAATGTAAATCATCCTAGCATTTCCCACATTCTTATTGATGTTAATGAATATGCTAGGAT
GATTTACATTGTGAAACGGAGGAAGTAGTAACCATGGACCATGGTAGACACTGAAAAATATGGA
AAATATTGGGGTCATCAGGCTACGTTCTTCAAGTCGACACGGGGGTCAGGGGACGAAGGGACTT
AGTCGTCGCCATAGGTACCATCCCCCATCTCCATCTTCTCAAGTAGAGAGCGAGCGAGACCTCT
GAAAAGATCAGCCATAGTGACCCTCTCACCGATGGCACGGAGATCTGGGCAGTCACCATCATGA
GACCTGGCAACCTGACATGTCTGATCATCGCGAAGCGAGCTTGGAGCTGACCATCGACGTAGAT
GTCGTGGCAGCTAGAAAGGTCGAGGCACTCGAGGTGGGGGCAGCCATCAAGGATGGCGTGCACC
CCTATCTCGGTCAGGTTATGACCTGCAATCTGCAGAAGCCGTAACTCATGCATGTTTTCTGCTA
TCGCGAAGGCATCCGCATTCCGCCTTGCCTCCCTCTGCTCGAAAGGTTCCTCGAATACCTCACC
ACCCTCCTCAAGGACATGCTTAATCAACTCATTCTCCAGCTCATCCTGATCAAAATAGTGCATA
TGGACTCTTAGGCGCTTCAGATGTGGGCGAACTCTGCCAACACATTTGAAAAAATCTGCTGGCA
TTTTATGATATGAGCACTCTATCTCCTCTAGAAGTGGACACTTAGCAGCAAGCATAGCCAATGA
TTGCCACTGAATAAATGTGCATGCAACGAGTCGAATGCTCTTCAATGTACTGGCCCTGCATAGG
CAATGAAAGAAAATGAGATACGACAATAAACTAAACCAAGCAATGCCAATTAATAAGTCCTGAA
TATTTCATTTTGCATAGCGCACATTTTCTGTACTCCTTTAAAAGGCTCTAGTGGTGGCAGCAGT
GAATCTGCCACCCCAACTACCCCATTGTAAATTTCAGTGTGAATAAAATTTACAAATAACCCCT
TAAATTTCTGAATATTAAAAAACAATCAAATCTAAATGGATAACGACATATAAAATCAAATTAA
GGTGAATATTATCCATAGGGAAAAGATGGGTAATTCATTTGATAAATAATACGTATTTATTTAT
TTATTTTAGTCAATAATATAATATATTTTGTTTTATCCGTAGCAAAGTACGGCACTACAGCCAG
TCAATTAGTTTTCCTGAAAGCCAAGAAACTGGGCTAAGAAACTTGTAGCAGCTGGCTAGCCATA
AACACCAGTGGCGGATTTAGGCCATTTCTGTGGGGTCGGCCGACCCCACAGCTTTTTGAAAAAC
GTACTATAAACCTCAATTTTCATGTATAAATCCAAAAGAATTTAGAGAAGTTACCCCACTTAAA
TACAAATCACTAGTAATTGACCTCATAGGTTTAAATTCCTGGCTCCGCCACTGATAAACACTAA
ACCCTTTTTTTCTTTTTGCAAGAAATGAACATGCAAAACTAACTTGACAGTGATAAATAAAGCC
TAATTGAACATCATACTGTACATATGCAAGCAGTTTATATATTAAGCTAGACGAGACTTAATTC
TGATATCTCAACATGGTCCATGTAAATCGCTAAAAGCTCAACCTCTCAAACCCAGAACCGAATA
TAGTATTTGGGAAACAATACCTTCTCACAATATAATCCAAGAGTTCACCAGTGACAAACTTCTG
GGCCCAGAATGACTCAATCTGTCCATCGGAGCGATCTATCGCTGCTTTTGCCATCGCGCACAGT
ATGCCAGTTCTCTTTGAGAAAATCACCTTGTGGCGTGTCATGTCCACGAACCGCCACAGTTCAG
GTGACTTTGAAGCTGCCAACCAAGAGTGGCACACAAAGCTTGCACCCATTAGGATCTCAACAGT
CCCAAGTTTCGTGAAGATTGCAGAAAGTGCATCCACTGGGAGCTCAGACCAATCCCTATCGCTA
TCAGTATCAGGTAAGGGGCTTGGCACCGCCTCCATCGTGCAAACAAGAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021