Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT5G60410_circ_g.24 |
| ID in PlantcircBase | ath_circ_045005 |
| Alias | At_ciR2574, Ath_circ_FC3874, Ath_circ_FC3877, Ath_circ_FC3878, AT5G60410_C4 |
| Organism | Arabidpsis thaliana |
| Position | chr5: 24297668-24300283 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
| Parent gene | AT5G60410 |
| Parent gene annotation |
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| Parent gene strand | + |
| Alternative splicing | AT5G60410_circ_g.1 AT5G60410_circ_g.2 AT5G60410_circ_g.3 AT5G60410_circ_g.4 AT5G60410_circ_g.5 AT5G60410_circ_g.6 AT5G60410_circ_g.7 AT5G60410_circ_g.8 AT5G60410_circ_g.9 AT5G60410_circ_g.10 AT5G60410_circ_g.11 AT5G60410_circ_g.12 AT5G60410_circ_g.13 AT5G60410_circ_g.14 AT5G60410_circ_g.15 AT5G60410_circ_g.16 AT5G60410_circ_g.17 AT5G60410_circ_g.18 AT5G60410_circ_g.19 AT5G60410_circ_g.20 AT5G60410_circ_g.21 AT5G60410_circ_g.22 AT5G60410_circ_g.23 AT5G60410_circ_g.25 AT5G60410_circ_g.26 AT5G60410_circ_g.27 AT5G60410_circ_g.28 AT5G60410_circ_g.29 AT5G60410_circ_g.30 AT5G60410_circ_g.31 |
| Support reads | 3/3 |
| Tissues | leaf/root, leaf, aerial, inflorescences, whole_plant |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | AT5G60410.1:6 AT5G60410.5:6 AT5G60410.3:6 AT5G60410.2:6 AT5G60410.4:6 AT5G60410.6:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.350097788 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
24298728-24300280(+) |
| Potential amino acid sequence |
MSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSKMK HCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGY SDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDASV NQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAY SGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGFQL FRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPLAF GRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSH QMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCF GVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNLR CPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSK MKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQE GYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDA SVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGP AYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGF QLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPL AFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINS SHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIF CFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVN LRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRIT SKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVK QEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGD DASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITP GPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAP GFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDN PLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGI NSSHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVR IFCFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFG VNLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNR ITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLP VKQEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRD GDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVI TPGPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPE APGFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLV DNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTN GINSSHQMSTREGSMDTTTET(+) |
| Sponge-miRNAs | ath-miR394a |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | response to drought stress; responsive to methyl jasmonate |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |