Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G60410_circ_g.24 |
ID in PlantcircBase | ath_circ_045005 |
Alias | At_ciR2574, Ath_circ_FC3874, Ath_circ_FC3877, Ath_circ_FC3878, AT5G60410_C4 |
Organism | Arabidpsis thaliana |
Position | chr5: 24297668-24300283 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT5G60410 |
Parent gene annotation |
DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
Parent gene strand | + |
Alternative splicing | AT5G60410_circ_g.1 AT5G60410_circ_g.2 AT5G60410_circ_g.3 AT5G60410_circ_g.4 AT5G60410_circ_g.5 AT5G60410_circ_g.6 AT5G60410_circ_g.7 AT5G60410_circ_g.8 AT5G60410_circ_g.9 AT5G60410_circ_g.10 AT5G60410_circ_g.11 AT5G60410_circ_g.12 AT5G60410_circ_g.13 AT5G60410_circ_g.14 AT5G60410_circ_g.15 AT5G60410_circ_g.16 AT5G60410_circ_g.17 AT5G60410_circ_g.18 AT5G60410_circ_g.19 AT5G60410_circ_g.20 AT5G60410_circ_g.21 AT5G60410_circ_g.22 AT5G60410_circ_g.23 AT5G60410_circ_g.25 AT5G60410_circ_g.26 AT5G60410_circ_g.27 AT5G60410_circ_g.28 AT5G60410_circ_g.29 AT5G60410_circ_g.30 AT5G60410_circ_g.31 |
Support reads | 3/3 |
Tissues | leaf/root, leaf, aerial, inflorescences, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G60410.1:6 AT5G60410.5:6 AT5G60410.3:6 AT5G60410.2:6 AT5G60410.4:6 AT5G60410.6:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.350097788 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24298728-24300280(+) |
Potential amino acid sequence |
MSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSKMK HCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGY SDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDASV NQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAY SGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGFQL FRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPLAF GRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSH QMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCF GVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNLR CPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSK MKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQE GYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDA SVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGP AYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGF QLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPL AFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINS SHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIF CFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVN LRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRIT SKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVK QEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGD DASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITP GPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAP GFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDN PLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGI NSSHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVR IFCFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFG VNLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNR ITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLP VKQEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRD GDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVI TPGPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPE APGFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLV DNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTN GINSSHQMSTREGSMDTTTET(+) |
Sponge-miRNAs | ath-miR394a |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress; responsive to methyl jasmonate |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |