Detail information of AT5G60410_circ_g.24


General Information
CircRNA Name AT5G60410_circ_g.24
ID in PlantcircBase ath_circ_045005
Alias At_ciR2574, Ath_circ_FC3874, Ath_circ_FC3877, Ath_circ_FC3878, AT5G60410_C4
Organism Arabidpsis thaliana
Position chr5: 24297668-24300283  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene AT5G60410
Parent gene annotation DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and
SAP domain
Parent gene strand +
Alternative splicing AT5G60410_circ_g.1 AT5G60410_circ_g.2 AT5G60410_circ_g.3 AT5G60410_circ_g.4 AT5G60410_circ_g.5 AT5G60410_circ_g.6 AT5G60410_circ_g.7 AT5G60410_circ_g.8 AT5G60410_circ_g.9 AT5G60410_circ_g.10 AT5G60410_circ_g.11 AT5G60410_circ_g.12 AT5G60410_circ_g.13 AT5G60410_circ_g.14 AT5G60410_circ_g.15 AT5G60410_circ_g.16 AT5G60410_circ_g.17 AT5G60410_circ_g.18 AT5G60410_circ_g.19 AT5G60410_circ_g.20 AT5G60410_circ_g.21 AT5G60410_circ_g.22 AT5G60410_circ_g.23 AT5G60410_circ_g.25 AT5G60410_circ_g.26 AT5G60410_circ_g.27 AT5G60410_circ_g.28 AT5G60410_circ_g.29 AT5G60410_circ_g.30 AT5G60410_circ_g.31
Support reads 3/3
Tissues leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G60410.1:6
AT5G60410.5:6
AT5G60410.3:6
AT5G60410.2:6
AT5G60410.4:6
AT5G60410.6:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCATCAGATGTCTA
CGAGGGAAGGTTCTATGGATACTACAACAGAGACTGgtgtgcctgtacgtgcaattaatcgacc
tggaggacagcttttgggagtcaacggccgcgacgatggacccattgtgtgttttttatcatcc
cttttgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 170
Transcript exons: 24297668-24297735,24300182-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCATCAGA
TGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 1734
Transcript exons: 24297668-24297741,24297871-24297978,24298462-24298623,24
298728-24298832,24298916-24298996,24299080-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCCATTATTACATCTTGTATTAGGGATGGAGTTAACAGAATATCCTTGAGTGGAGGTGAC
GTTCGGATTTTTTGTTTTGGGGTCAGACTTGTGAAGCGCAGGACTCTACAACAGGTTCTAAATT
TGATTCCAGAAGAGGGTAAAGGGGAGACTTTTGAAGATGCTCTTGCACGTGTCCGCCGATGCAT
TGGAGGTGGAGGTGGAGATGATAATGCCGACAGTGATAGTGACATTGAAGTTGTTGCTGATTTC
TTCGGTGTCAATCTTCGGTGTCCTATGAGCGGTTCTAGGATAAAAGTTGCTGGGAGATTTTTAC
CCTGTGTGCACATGGGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCAACGTTCCAGAAA
GTGGCAGTGCCCTATTTGTCTGAAGAACTACTCAGTGGAGCATGTAATCGTCGATCCTTATTTT
AACCGTATCACGTCTAAGATGAAGCATTGTGATGAAGAGGTGACTGAAATTGAAGTGAAACCTG
ATGGTTCTTGGCGTGTAAAGTTCAAAAGAGAGAGTGAGCGAAGGGAACTGGGGGAACTCTCACA
GTGGCATGCACCTGATGGTAGCCTTTGCCCCTCTGCTGTTGATATTAAACGGAAGATGGAAATG
TTACCGGTTAAGCAAGAAGGTTACTCAGATGGTCCAGCCCCGCTAAAACTTGGAATAAGGAAGA
ATCGTAATGGCATTTGGGAAGTTAGCAAACCTAATACAAATGGATTATCTTCCAGTAATAGGCA
AGAAAAGGTTGGGTATCAGGAGAAGAATATTATACCAATGAGTAGTAGTGCTACTGGAAGTGGT
AGGGATGGTGATGATGCAAGCGTAAACCAGGATGCTATTGGAACTTTTGACTTTGTAGCCAACG
GCATGGAACTTGATTCCATTTCCATGAATGTTGATTCAGGTTATAACTTTCCTGACAGAAACCA
ATCTGGCGAGGGTGGAAATAATGAAGTCATCGTTCTGAGTGATTCTGATGACGAGAATGATTTA
GTGATCACTCCAGGGCCTGCATACAGTGGTTGTCAAACAGATGGTGGACTTACTTTTCCACTGA
ACCCTCCTGGAATAATTAACTCATATAATGAGGACCCACACAGCATAGCTGGGGGAAGTTCAGG
CTTAGGTCTTTTCAATGATGATGATGAATTTGATACGCCCCTTTGGTCATTTCCTTCTGAAACT
CCAGAAGCCCCTGGGTTCCAACTATTTAGATCTGATGCTGACGTTTCAGGAGGTTTAGTTGGTT
TGCATCATCATAGTCCACTAAACTGTTCTCCTGAAATAAATGGAGGTTATACCATGGCTCCTGA
GACATCAATGGCATCTGTTCCTGTGGTTCCTGGCTCTACTGGCCGATCTGAAGCAAACGATGGC
CTAGTTGACAATCCTCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTTTTGCCAACAA
AACCAGATGCTTCAGCTCAGTCGGGTTTTAAAAACCAAGCTGATATGTCAAATGGTCTCCGTAG
TGAAGACTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACT
ACAAACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAG
AGACTG

Transcript length: 174
Transcript exons: 24297668-24297738,24300181-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCCAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCAT
CAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 182
Transcript exons: 24297668-24297737,24300172-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACT
CAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 194
Transcript exons: 24297668-24297737,24300160-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAA
ACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGAC
TG

Transcript length: 199
Transcript exons: 24297668-24297737,24300155-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCACTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAAC
TACAAACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACA
GAGACTG

Transcript length: 218
Transcript exons: 24297668-24297737,24300136-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCAATGGTCTCCGTAGTGAAGACTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGA
ATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGG
TTCTATGGATACTACAACAGAGACTG

Transcript length: 238
Transcript exons: 24297668-24297737,24300116-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCAAAACCAAGCTGATATGTCAAATGGTCTCCGTAGTGAAGACTGGATCTCGCTTAGGCT
AGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCAT
CAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 256
Transcript exons: 24297668-24297703,24300064-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACCTTCAAATATTTTTGCCAACAAAACCAG
ATGCTTCAGCTCAGTCGGGTTTTAAAAACCAAGCTGATATGTCAAATGGTCTCCGTAGTGAAGA
CTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAAC
GGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 369
Transcript exons: 24297668-24297737,24297869-24297920,24298731-24298832,24
300139-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCAGATTACATCTTGTATTAGGGATGGAGTTAACAGAATATCCTTGAGTGGAGGAGCGGT
TCTAGGATAAAAGTTGCTGGGAGATTTTTACCCTGTGTGCACATGGGCTGTTTTGACCTTGATG
TGTTTGTGGAGTTGAATCAACGTTCCAGAAAGGGTCTCCGTAGTGAAGACTGGATCTCGCTTAG
GCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGC
CATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG

Transcript length: 411
Transcript exons: 24297668-24297736,24298459-24298623,24300107-24300283
GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACTAGGTTCTAAATTTGATTCCAGAAGAGGGTAAAGGGGAGACTTTTGAAGATGCTCTTGC
ACGTGTCCGCCGATGCATTGGAGGTGGAGGTGGAGATGATAATGCCGACAGTGATAGTGACATT
GAAGTTGTTGCTGATTTCTTCGGTGTCAATCTTCGGTGTCCTCGGGTTTTAAAAACCAAGCTGA
TATGTCAAATGGTCTCCGTAGTGAAGACTGGATCTCGCTTAGGCTAGGCGATAGCGCCTCTGGG
AATCATGGAGATCCTGCAACTACAAACGGGATTAACTCAAGCCATCAGATGTCTACGAGGGAAG
GTTCTATGGATACTACAACAGAGACTG

Genomic sequence GTGTGCCTGTACGTGCAATTAATCGACCTGGAGGACAGCTTTTGGGAGTCAACGGCCGCGACGA
TGGACCCATTGTGTGTTTTTTATCATCCCTTTTGAGTAGTAACCCTTTTGAATTACATATAGGA
GTCAATCTCTCATACATTGAAAATCTAGCAATCAGTGATGTAAGTTTTAACCATTTCATTTTAC
TATTTTGGCAGATTACATCTTGTATTAGGGATGGAGTTAACAGAATATCCTTGAGTGGAGGTGA
CGTTCGGATTTTTTGTTTTGGGGTCAGACTTGTGAAGCGCAGGACTCTACAACAGGTACTGATA
ACATATATGCATAAGAAACATTCAAAGATTTGGTCGTATATGTGGTCAATGAAGAGTCCAAACA
TAAATGTTCAAAAAGGAACGAAATTAATATTCTGAATACAAAAAGAAAGAATAAATTATGTTGG
CGTACCCAAGAAAGTAATTTTGTGGAAGTTACCTGTGGTTACACACTTACGTTAAACTATTCCC
ATGTTATTTCCCACTCCCACTAAATCTAGAAAAGTTAGTCAGATTTCAAATTTCACAGTCCTAT
TCTTCTTCCTATATTTCACGTATATGAGCCACTGAGCCTGGCCTTGTATGAGATTTGGTTACGG
AAGTGTAGTCTGTCCTTGTGCTGCAACATTTATCCCTTTAATCAATATATTTATCACTTTTGTT
GGTGTTCTTGTATACAGAGGAATTCATATTGTACGTTAATGATCTAATGATCTCCAAGTTGCTT
ATATATATACTCATTTTTGCATCTAGGTTCTAAATTTGATTCCAGAAGAGGGTAAAGGGGAGAC
TTTTGAAGATGCTCTTGCACGTGTCCGCCGATGCATTGGAGGTGGAGGTGGAGATGATAATGCC
GACAGTGATAGTGACATTGAAGTTGTTGCTGATTTCTTCGGTGTCAATCTTCGGTGTCCTGTAA
GTTACTAATAGCTCGTAGCCCAGTTTTTATACTTATCCTCTTCCTAGGGCTATCTTGCAGACTG
AATTTTTTTTATTGTCTTTTCTGTTTGCGTCATTAGATGAGCGGTTCTAGGATAAAAGTTGCTG
GGAGATTTTTACCCTGTGTGCACATGGGCTGTTTTGACCTTGATGTGTTTGTGGAGTTGAATCA
ACGTTCCAGAAAGGTAGGTCTACTATCCTTGTCTAGATATTGGGTTATGTCTCTTGTTTTCTGA
CTTTAGTTGTTCTGGGGTTTGTTAACATGCAGTGGCAGTGCCCTATTTGTCTGAAGAACTACTC
AGTGGAGCATGTAATCGTCGATCCTTATTTTAACCGTATCACGTCTAAGGTATGTATTCTTATG
GGAATTCAAGAATTCTTAAAATCTTTGTATCTACGCTTTTATTCAGTAGTTGTCTTCCTGCACG
ACAGATGAAGCATTGTGATGAAGAGGTGACTGAAATTGAAGTGAAACCTGATGGTTCTTGGCGT
GTAAAGTTCAAAAGAGAGAGTGAGCGAAGGGAACTGGGGGAACTCTCACAGTGGCATGCACCTG
ATGGTAGCCTTTGCCCCTCTGCTGTTGATATTAAACGGAAGATGGAAATGTTACCGGTTAAGCA
AGAAGGTTACTCAGATGGTCCAGCCCCGCTAAAACTTGGAATAAGGAAGAATCGTAATGGCATT
TGGGAAGTTAGCAAACCTAATACAAATGGATTATCTTCCAGTAATAGGCAAGAAAAGGTTGGGT
ATCAGGAGAAGAATATTATACCAATGAGTAGTAGTGCTACTGGAAGTGGTAGGGATGGTGATGA
TGCAAGCGTAAACCAGGATGCTATTGGAACTTTTGACTTTGTAGCCAACGGCATGGAACTTGAT
TCCATTTCCATGAATGTTGATTCAGGTTATAACTTTCCTGACAGAAACCAATCTGGCGAGGGTG
GAAATAATGAAGTCATCGTTCTGAGTGATTCTGATGACGAGAATGATTTAGTGATCACTCCAGG
GCCTGCATACAGTGGTTGTCAAACAGATGGTGGACTTACTTTTCCACTGAACCCTCCTGGAATA
ATTAACTCATATAATGAGGACCCACACAGCATAGCTGGGGGAAGTTCAGGCTTAGGTCTTTTCA
ATGATGATGATGAATTTGATACGCCCCTTTGGTCATTTCCTTCTGAAACTCCAGAAGCCCCTGG
GTTCCAACTATTTAGATCTGATGCTGACGTTTCAGGAGGTTTAGTTGGTTTGCATCATCATAGT
CCACTAAACTGTTCTCCTGAAATAAATGGAGGTTATACCATGGCTCCTGAGACATCAATGGCAT
CTGTTCCTGTGGTTCCTGGCTCTACTGGCCGATCTGAAGCAAACGATGGCCTAGTTGACAATCC
TCTTGCATTTGGTAGAGACGATCCCTCACTTCAAATATTTTTGCCAACAAAACCAGATGCTTCA
GCTCAGTCGGGTTTTAAAAACCAAGCTGATATGTCAAATGGTCTCCGTAGTGAAGACTGGATCT
CGCTTAGGCTAGGCGATAGCGCCTCTGGGAATCATGGAGATCCTGCAACTACAAACGGGATTAA
CTCAAGCCATCAGATGTCTACGAGGGAAGGTTCTATGGATACTACAACAGAGACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.350097788
Functional Information
Coding potential Y
Potential coding position 24298728-24300280(+)
Potential amino acid sequence MSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSKMK
HCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGY
SDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDASV
NQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAY
SGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGFQL
FRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPLAF
GRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSH
QMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCF
GVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNLR
CPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRITSK
MKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQE
GYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDA
SVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGP
AYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGF
QLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDNPL
AFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINS
SHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIF
CFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVN
LRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRIT
SKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVK
QEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGD
DASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITP
GPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAP
GFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLVDN
PLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGI
NSSHQMSTREGSMDTTTETGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVR
IFCFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFG
VNLRCPMSGSRIKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNR
ITSKMKHCDEEVTEIEVKPDGSWRVKFKRESERRELGELSQWHAPDGSLCPSAVDIKRKMEMLP
VKQEGYSDGPAPLKLGIRKNRNGIWEVSKPNTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRD
GDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVI
TPGPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPE
APGFQLFRSDADVSGGLVGLHHHSPLNCSPEINGGYTMAPETSMASVPVVPGSTGRSEANDGLV
DNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTN
GINSSHQMSTREGSMDTTTET(+)
Sponge-miRNAs ath-miR394a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress; responsive to methyl jasmonate