Detail information of AT5G38880_circ_g.1


General Information
CircRNA Name AT5G38880_circ_g.1
ID in PlantcircBase ath_circ_041560
Alias 5:15563512-15566506
Organism Arabidpsis thaliana
Position chr5: 15563512-15566506  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT5G38880
Parent gene annotation AUGMIN subunit 5
Parent gene strand -
Alternative splicing AT5G38880_circ_g.2 AT5G38880_circ_g.3 AT5G38880_circ_g.4 AT5G38880_circ_g.5 AT5G38880_circ_g.6
Support reads 2
Tissues flower
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT5G38880.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCATGCAAACGGTTAATAAACTTGTGGCATAAATCACGAGCTTCAGCTGCTTTGTTTAGTGC
ATCTTCAGTAGCCAAAAATTGTTGAACATGGGCTTTcattttctttacaaattgtacgtcgaac
tttccctttttgccaacattgttgttgaatatcagcttcaccagtgtgtataatgagaatcaag
agcggcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTTCTTTACAAATTGTACGTCGAACTTTCCCTTTTTGCCAACATTGTTGTTGAATATCAGC
TTCACCAGTGTGTATAATGAGAATCAAGAGCGGCATGATGGGTTTTTACGTTCGCAATGATTCT
TTATCATAGAAGGCAAGAAGCTGTTTGACATGGTTTTGCCAAGCTGCAACACTTTGACCATCTA
CAGTGACCCAATCCACAACTGTTGATGCAGGTTGTTCCCACCATTCATCAAGCTGCATTCGAAA
CACAAACAAACAAAAAATGGTATTAAGCTTGAAGTAAGGAAAGGTAGTGAAGAATAGAAAAAGA
ACTAGAACCGTAAACTTTATTTGCAATTTTGTAAGCAACTGTCAAATGAAAACCTGATTTTTTT
CATACGCAAGCTTAACAAGTCCTAAAGGAGACTAAATAAAAGGTTGAGTAGCCATCGTAAGAGG
ATTCTAAATCCCAAAAACACGCAAGCACTATTAAGCCATACTCTGGGAGTGATATGACTTAAGA
ACGTCCACGTGAAGACACATTAAGACAGTCACCATAAGTTAATAGGACTAGCTTCTAAACATAA
CGTAAAAGCATGACCGTTGCTAGAACACACTTTTTTACTCCACGGAAATTAGAATGGAATGTGC
TTATGATATGACCATGTCCATACAGCACTGAGCTGGGGTTTAGCATATTAACAATTAAAAAAGA
AGAATAATACTAGAAAGTAGTTCCATACCAAACCCCTAACGTATTTGCAGTGTTCCGAGGAAGC
TTGCGCATTCTGAACTGCAGTCCTAAGTTCAGGTAACCACTGGTCCGATATTGTATTCTCTTGT
TCAGAAGCTAGATCTAGGCAGTAGTTAGTTGTTCTGCATACAAGATACACAGTATAGTGGAAGT
TTACATAAGATAGTGTGGGGCAATAAATAAGATAATTGTGGCCTGTGTAGACCAGAGCACTGAG
GAACACGCTTTACCTTTCATATTTTTGCTGGGCACGGAAAGCATGATCTAACAGAGAATGGCCA
CTTTCAACTAGATCCTGCCGAATATGGACCAAATCGATTGCCTTTGCTAAGTCTTCTAAAACAC
ATGCTTCAGAACCACGAACTCTTAAGCAGAACTCAAGAGACTCTAACACTGAGGCCAAACTTGC
ATCTGAACCCTCAAGACCTATTCAAGCAGCAGAATATAGATGATAAGCAAGTCCTACTAAGAAG
CCACTAAGAATTTTGATCTATGAAGATTTCTAAGTATTTTATATAAAAGGTGTTCCACTTTTTA
TGGTTGAAAACAACAGCAGATCCAAAGCGTGGTAATGATATGCAACTAGTGGCCATCATTAAAC
CTTTTGGTTATTATAGCATTCCTCAATCGACGTAATAGGTAGATGAACTAACAATGCTAGGAAC
TTTTTTTTATTTTTAAAATGTTTGTTTTATGATTTTGCACTGCATTGAGAAAGATTGTCATTCA
TGAAGCAGTGAGCAATAGTTTCATTAAAAAGCTCCTTGTCAATGCAAATAATTTTTGTCCAGAG
AGATGAACTATACGTCCTTGGATTTTTGAAAAAAAAACGAAGAAAAAAATCTTACCTGCAGGAT
ATTGAAGGGCAGCAGAAATGCGACATATAGATGGTATTGCCGATGGATCTCTTGCACCAGCTCT
AGCCGTTAATAGAGCAGCATTCTTCTCTGCATATGCAACAGCTTCAGGTCCCGTCGATCCATTA
GCTCCCATAGATTCCAGAAGTCCCTGATTAAAAAAATGTTCATATAAATGAACAGAAACGAGGT
ATTTACATGCAAGTTTGCCAAGTTGAAAGAAAATGATCTTCTAATTGCAAGTTCTGTTACACCT
ATGAGAGCAACAAATTTTAACTTGAACCATAAACTCCAAATTTTTCTTATGCTGCATGATTATT
TGATTTACAGACCAAAAGAACCTTGAAGATATACCACACTTTTCTATATGCAACTTCTATTGTT
TATATATTATTCAACAAATATCAGTCTACGATTATGAGTGAAATATATCCTACAAATTAACTGA
AATACAATTGTATCACGCAGAAATGGATAGATAAAATACATCAGAATGTCATCTGACAACTTAC
ACACCTGGGGAGTTGCTGGAAGCATATAAAGACTGTTATCAGGACTTTGAAAGAAAGCAGACAC
TTCTTTCTCAATGAAATCTTTTGCGCTGTTTGAAATGTCCACAACAACTTCACTGGCTGGAATT
ACAGTGGCTGATGCATATTCCCTTGCAGCTAGTGGTTGTTGATTCCAGAATGCAACAGCATCCT
ATATAAAAAGGAAGGTCATGATACAGAGTATTACTCATGGTATTTATCACTTAATCAATTTAAT
GAATGAATCACTTGGGATATTACCATGTTGGCCTTGAGAAGAGTTGTATATATGGTTTCAAGTT
CGGATCTGCGAGCATCAAATTCCTCAATTTTCTTCCACTTCTTTTTCAAGGAATCTTCGGCTTC
TTTTCTTTCTGCACATAATTTATTCAGCCGTTGTATTTCAGATAACAATGTGTTTAAGCTAGCC
CTCAAACCAGCAGCTTCTCTTTCCTTTCCCCATACATCCAACTGCAAAGATAAAATCGGATCGT
TTGTTCAAGCAAGTAAATCAGCATATATATTAAACATAAAATGAACTTTAATGATAACTGAGAA
TCAGTCATGCAGTGCCTGCTACATAACAAGTATAAGAGTGTTTGGATTGTAAGATTTGTACAGG
AACATGATTTTGTCTTTTTAGATTCAAGTGAAGGGAAAAAAACTAAAGAAACCAAGGGAGTCTG
GCATCTACCTCAAATTGCCTAAGATTGCTACCACTCTGTGTTGTGCCTCCAACAAACGAATGAG
TAGCTGTATCAGCACTTCCATGCAAACGGTTAATAAACTTGTGGCATAAATCACGAGCTTCAGC
TGCTTTGTTTAGTGCATCTTCAGTAGCCAAAAATTGTTGAACATGGGCTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.182626647
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020