Plant Circular RNA Database

Detail information of Os01g0212100_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os01g0212100_circ_g.7
					
						ID in PlantcircBase
						osa_circ_000808
					
						Alias
						Os_ciR1787
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 6118451-6125039  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os01g0212100						
					
						Parent gene annotation
						
							DEAD-like helicase, N-terminal domain containing protein. (Os01t
0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0212100_circ_g.1 Os01g0212100_circ_g.2 Os01g0212100_circ_g.3 Os01g0212100_circ_g.4 Os01g0212100_circ_g.5 Os01g0212100_circ_g.6 Os01g0212100_circ_g.8 Os01g0212100_circ_g.9 						
					
						Support reads
						7
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0212100-01:10
Os01t0212100-02:10

General Information
CircRNA Name	Os01g0212100_circ_g.7
ID in PlantcircBase	osa_circ_000808
Alias	Os_ciR1787
Organism	Oryza sativa
Position	chr1: 6118451-6125039 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Os01g0212100
Parent gene annotation	DEAD-like helicase, N-terminal domain containing protein. (Os01t 0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
Parent gene strand	+
Alternative splicing	Os01g0212100_circ_g.1 Os01g0212100_circ_g.2 Os01g0212100_circ_g.3 Os01g0212100_circ_g.4 Os01g0212100_circ_g.5 Os01g0212100_circ_g.6 Os01g0212100_circ_g.8 Os01g0212100_circ_g.9
Support reads	7
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0212100-01:10 Os01t0212100-02:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCC
GGACACCCAATCCTGCCCTTCACTAACTATATGATGatttctgatatcgagagtttagttgtcg
caccaatatccaaggcatccgcaagacaaagagcaggccgagctggaagggtgcgaccaggaaa
gtgcttta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 126
Transcript exons: 6118451-6118478,6124942-6125039
ATTTCTGATATCGAGAGTTTAGTTGTCGTAATGTTATTGCCATTGAACCATCATGGCTTACGGA
AGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATG
Transcript length: 997
Transcript exons: 6118451-6118551,6119744-6119834,6120989-6121153,6122149-
6122238,6122341-6122412,6122800-6122898,6123025-6123111,
6123899-6123952,6124709-6124788,6124882-6125039
ATTTCTGATATCGAGAGTTTAGTTGTCGCACCAATATCCAAGGCATCCGCAAGACAAAGAGCAG
GCCGAGCTGGAAGGGTGCGACCAGGAAAGTGCTTTAGGCTTTATACAGAGGAATTTTACCTTAA
AGAAATGCAGCCAGAAGGGATTCCTGAAATGCAAAGGTCTAACCTTGTTTCCTGCATAACACAG
TTGAAAGCTCTAGGAATAGACAACATTTTGGGATTTGATTGGCCAGCTTCTCCATCACCAGAGG
CAATGATTCGAGCTCTTGAAGTTCTATATTCCCTGGGAATCCTTGATGAAGATGCCAAACTAAC
AGTACCCCTTGGCTTCCAAGTTGCTGAGATCCCTCTGGACCCTATGATTTCAAAAATGATCCTT
TCAGCCAATAATTTCGGATGCTCTGATGAGATATTGACCATAGCAGCATTTCTATCTGTTCAAT
CTGTGTGGGTTTCCATGAGAGGAGTGAAAAAAGAGTTTGATGAAGCTAAGCTCCGTTTTGCTGC
TGCTGAGGGAGATCATGTGACGTTCCTGAATATCTACAAAGGATTTCATCAATCTGGAAAATCT
AGTCAGTGGTGTTACAAGAACTTTTTGAACCACCAAGCATTGAAGAAGGTTATTGACATCAGGG
AGCAGCTTGTCAGGATTATCAAGAGGTTTGGCATACCACTAACATCATGTGATAGAGATATGGA
GGCAGTAAGAAAAGCTATTATTGCTGGTGCATTTGCTTATGCATGCCATCTAGAGGAATACAGC
CAGAATGGGATGTACAAAACAATAAGGACCTCACAAGAAGTTTATATTCATCCTTCTTCTGTGC
TATTTAGGGTTAATCCAAAGTGGGTCATCTACCAGTCTCTAGTTTCAACTGATAAGCACTATAT
GCGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTC
CGGACACCCAATCCTGCCCTTCACTAACTATATGATG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCC GGACACCCAATCCTGCCCTTCACTAACTATATGATGatttctgatatcgagagtttagttgtcg caccaatatccaaggcatccgcaagacaaagagcaggccgagctggaagggtgcgaccaggaaa gtgcttta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 126 Transcript exons: 6118451-6118478,6124942-6125039 ATTTCTGATATCGAGAGTTTAGTTGTCGTAATGTTATTGCCATTGAACCATCATGGCTTACGGA AGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATG Transcript length: 997 Transcript exons: 6118451-6118551,6119744-6119834,6120989-6121153,6122149- 6122238,6122341-6122412,6122800-6122898,6123025-6123111, 6123899-6123952,6124709-6124788,6124882-6125039 ATTTCTGATATCGAGAGTTTAGTTGTCGCACCAATATCCAAGGCATCCGCAAGACAAAGAGCAG GCCGAGCTGGAAGGGTGCGACCAGGAAAGTGCTTTAGGCTTTATACAGAGGAATTTTACCTTAA AGAAATGCAGCCAGAAGGGATTCCTGAAATGCAAAGGTCTAACCTTGTTTCCTGCATAACACAG TTGAAAGCTCTAGGAATAGACAACATTTTGGGATTTGATTGGCCAGCTTCTCCATCACCAGAGG CAATGATTCGAGCTCTTGAAGTTCTATATTCCCTGGGAATCCTTGATGAAGATGCCAAACTAAC AGTACCCCTTGGCTTCCAAGTTGCTGAGATCCCTCTGGACCCTATGATTTCAAAAATGATCCTT TCAGCCAATAATTTCGGATGCTCTGATGAGATATTGACCATAGCAGCATTTCTATCTGTTCAAT CTGTGTGGGTTTCCATGAGAGGAGTGAAAAAAGAGTTTGATGAAGCTAAGCTCCGTTTTGCTGC TGCTGAGGGAGATCATGTGACGTTCCTGAATATCTACAAAGGATTTCATCAATCTGGAAAATCT AGTCAGTGGTGTTACAAGAACTTTTTGAACCACCAAGCATTGAAGAAGGTTATTGACATCAGGG AGCAGCTTGTCAGGATTATCAAGAGGTTTGGCATACCACTAACATCATGTGATAGAGATATGGA GGCAGTAAGAAAAGCTATTATTGCTGGTGCATTTGCTTATGCATGCCATCTAGAGGAATACAGC CAGAATGGGATGTACAAAACAATAAGGACCTCACAAGAAGTTTATATTCATCCTTCTTCTGTGC TATTTAGGGTTAATCCAAAGTGGGTCATCTACCAGTCTCTAGTTTCAACTGATAAGCACTATAT GCGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTC CGGACACCCAATCCTGCCCTTCACTAACTATATGATG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_001891* 						
					
						PMCS
						0.305867953

Conservation Information
Conserved circRNAs	osi_circ_001891*
PMCS	0.305867953

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6124945-6125026(+)
						
						Potential amino acid sequence
						
							MLLPLNHHGLRKLHHIFISSGHPILPFTNYMMISDIESLVVAPISKASARQRAGRAGRVRPGKC
FRLYTEEFYLKEMQPEGIPEMQRSNLVSCITQLKALGIDNILGFDWPASPSPEAMIRALEVLYS
LGILDEDAKLTVPLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKK
EFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFG
IPLTSCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6124945-6125026(+)
Potential amino acid sequence	MLLPLNHHGLRKLHHIFISSGHPILPFTNYMMISDIESLVVAPISKASARQRAGRAGRVRPGKC FRLYTEEFYLKEMQPEGIPEMQRSNLVSCITQLKALGIDNILGFDWPASPSPEAMIRALEVLYS LGILDEDAKLTVPLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKK EFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFG IPLTSCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0212100_circ_g.7

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