Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020834_circ_g.1 |
ID in PlantcircBase | zma_circ_009377 |
Alias | zma_circ_0002564, GRMZM2G089501_C2 |
Organism | Zea mays |
Position | chr7: 134253067-134254252 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d020834 |
Parent gene annotation |
Transcription factor BIM2 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d020834_T004:2 Zm00001d020834_T006:2 Zm00001d020834_T008:2 Zm00001d020834_T001:2 Zm00001d020834_T009:1 Zm00001d020834_T005:2 Zm00001d020834_T007:2 Zm00001d020834_T002:2 Zm00001d020834_T003:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.156265953 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
134254163-134254249(+) 134253343-134253069(-) |
Potential amino acid sequence |
MESGSRSSGGAGFDDDDGLTTRREVSSSLQGNFLLKTHDFLQPLDQKPGAPPEPSPLPASAAES RHQPQQQVVVANQHALPLPGGVGTFSISPAPVSVALPAAVVKSEPPFVLWGQPAATLHPGARGH QQQWALPFAGAGQVRLPPQQAPPDRKGRGGAGGGVMESGSRSSGGAGFDDDDGLTTRREVSSSL QGNFLLKTHDFLQPLDQKPGAPPEPSPLPASAAESRHQPQQQVVVANQHALPLPGGVGTFSISP APVSVALPAAVVKSEPPFVLWGQPAATLHPGARGHQQQWALPFAGAGQVRLPPQQAPPDRKGRG GAGGGVMESGSRSSGGAGFDDDDGLTTRREVSSSLQGNFLLKTHDFLQPLDQKPGAPPEPSPLP ASAAESRHQPQQQVVVANQHALPLPGGVGTFSISPAPVSVALPAAVVKSEPPFVLWGQPAATLH PGARGHQQQWALPFAGAGQVRLPPQQAPPDRKGRGGAGGGVMESGSRSSGGAGFDDDDGLTTRR EVSSSLQ(+) MERRGRLAPEHERRLRLDDGRRQRDGHGRGADAEGADAAGQGQRVLVRDDDLLLRLVPALRGGS GQRRRLRRRSRLLIQRLQEVVRLQEEITLERRGDLAARREAVVVVEPRPAAGSGARLHDAATGA APALSIRRRLLRRQPDLPGAGEGERPLLLVPSRARMERRGRLAPEHERRLRLDDGRRQRDGHGR GADAEGADAAGQGQRVLVRDDDLLLRLVPALRGGSGQRRRLRRRSRLLIQRLQEVVRLQEEITL ERRGDLAARREAVVVVEPRPAAGSGARLHDAATGAAPALSIRRRLLRRQPDLPGAGEGERPLLL VPSRARMERRGRLAPEHERRLRLDDGRRQRDGHGRGADAEGADAAGQGQRVLVRDDDLLLRLVP ALRGGSGQRRRLRRRSRLLIQRLQEVVRLQEEITLERRGDLAARREAVVVVEPRPAAGSGARLH DAATGAAPALSIRRRLLRRQPDLPGAGEGERPLLLVPSRARMERRGRLAPEHERRLRLDDGRRQ RDGHGRGADAEGADAAGQGQRVLVRDDDLLLRLVPALRGGSGQRRRLRRRSRLLIQRLQEVVRL QEEI(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |