Detail information of Pbr042643.1_circ_igg.1


General Information
CircRNA Name Pbr042643.1_circ_igg.1
ID in PlantcircBase pbe_circ_000004
Alias pear_circRNA_0000020
Organism Pyrus betulifolia
Position chrscaffold1.0: 1651430-1656160  JBrowse»
Reference genome Pyrus_bretschneideri_scaffold
Type   igg-circRNA
Identification method find_circ, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATGTCTTCAGTTTCGGGATCATATTAGTGGAGATTGTAAGCAGCAAGAAAAACAATGGTTTA
TATCAGGAGGATCATTCCATGAACTTGATAGGACATgtttggcagctgtggagagaagacagag
ccttggaaattgtggattcgtcattagagtcaaatcagtccgaggaagtcgtgagatgcattca
ggttggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGGCAGCTGTGGAGAGAAGACAGAGCCTTGGAAATTGTGGATTCGTCATTAGAGTCAAATC
AGTCCGAGGAAGTCGTGAGATGCATTCAGGTTGGCCTTTTGTGTGTGCAAGAAGATCCAGAGGA
CCGCCCAACCATGGCAGCTGTTGTTGTCATGTTAAGCGGCGAAGCATCTCCTCCAGTACCTAAG
CAGCCTGCATTTGTATTCAGAAAAAACCCCTGCAGTAATGCTGATCCATCAGTTTCGAAGGAAT
CATGTTCTATAAACGACCTGACAATAACTAAATTTCAAGCTCGATAATGATGCAGCAGGCTCTT
TTGCTTGCATAGTTATCGAACTTCTATTCTTTTTATTTCCCTTATAATTGTCTGTCCCTATACT
GCTGGCATTTGTTGGCCTTTGTATGACACACCGGAAATGCATTAGAAAGCAACGTGCGGTTTCA
ATGTATGCGTAAGCGACCGGAACATGAATCTTTTGAGCAATGATGAGAGAATACGGATGCAGTC
TAAGCGATCGGGAGTTTGAGCTCAGATGACTTAGCAATTTTAAGATATTCGAGTACCTTTGAAT
TTGAGTGACTTGATCATTTCACTGTCTTTCTTGTTGCAATAATTCTGATACTTTATTGTGGTTG
AAGGTGGAGAATATTTCATATTTGTCAAATTGCAGATAACCCTTGAAACGTTCAAAAGCCAGAT
CCATTTTATTTATTTTTTTGTTATATGGTTCTCTTTGGTCTTTCCAGTTTTTTTAACTTCCTGT
GGTTGAGTCATAGTCAACGTAATTAGAGTCGGAGAGAGACTTCCATCAAATGGGGATATCAAAA
ATAGCAACAATGCGAACGTATAGGTACGAAAATCACAGAAAAATAATTAAAATCCATTGATTCA
AACACACAGATGCCCCGAAAATGTACATGAAAGTGTTGCTTGTGGTTTTCCTCTTCTGATTTGC
ACGTCCAGGGAAATCATCAACATGTGAAGGACGGTGACCTCTTATTCTCCAATAAAAAAAAAAA
TAATCACACTTGGGAGTATTAATAAATCAACATGTTGTCACCTTTCATGTTCATTTGATTATTC
TTCTTTGAAAAAGGGATTAGCTGGCAGTTTCGTCGCTGTAGTCCACATTTCCAGAGAAAATGAA
GACTCACAAAGACATTTCACCCTCCCATGCCCACCATCTTGTGGTTCACAGGCATTAGAAATAA
ACTCAGGACATGCTGTGTGGAATTCGGGCATAGAATTCGTCCCTGACCATTGGGTCATCCCATG
ATGGTTATGTTCATTTTACCATTGGTATAGCTTATGTATGCAGTGAATGTAAGTCTTGTAGCCT
AATGCTTATCACCTCATATTCAAGGATTATTAATCTCAAATGATTAAGATTGTTCAGACGCACA
TTACCGTGTGTTCATGTTAGTAGTCGAAAGAGAAATTTTGTCTTATAACCAATATAACATTCTA
GTCAAATGACAATAAATTTGTGAGAATTAGGACAAATCCTATGCCATGTGACATTATAAGACGC
AAGAGACGAGTATCGAAGGACATTATGAGATGGTGGTGTGATTATGATTATGTCCGTTTTGGCA
GCAGGTCTGCTGTCCCTAAAATGAAGCTGAGTTCGTATTAAATGGTATGACACGTGTCAAAAAA
TGATAGAAGAAATACGGAGGAGGGAGACAGCACTGAGCCGTTGGTTTTGAATTAATCAAAATGA
GGGTACTTATTATCACCGGATGATTCCAAATAAAGAAAAATCATTATCCAAATTCTTGCGGGGC
GATTGAAGCACAAAACTCTAACCGATTATTCTTCGAAGAAACTGATATGACTGTCAACATCCGA
AGTCTCCTTGACTCGAGCCATGCTTGCCAGTTGCCGTATAAACTACTCAATCCAAATAAGCAGC
AGAAATTCCAAGAGAAAAAGATAAATATCAGGGATAATTCTTCATCGTAGATGCGAAATCCCAA
ATCCCCAGAAGAAAAATGTTATCCTTCAAGCCTCTGTTTCTGTTCTTCCTCCTCCTTACGCCAC
TCTGCACATCTATTGACACCATAGCACTCAACCAACTGCTCAAAGACGGCGACACTCTAGTCTC
CAAAGACAGAAAATTTGAGTTGGGATTCTTCAGGCCCGACAACTCCAGTAGTTCCACGTACGTC
GGAATCTGGTATGCAGATCAACCTCAAAAAACAGTTGTTTGGGTGGCAAACAGAGACAACCCCG
TCAACGACAGTTCCGGAGTTCTAGCAATTAACAGGTACGGAAATCTGGTTCTCTCTGCTGCTGG
GAACATTTCCATTTGGTCAACGAATGTGTCTGTCGATGTCCAAACCAGAAGCACTTTTGTAGCT
CAGCTTTTAGATTCTGGAAATTTAGTGCTTTTCCAGGAAAATAAAAGTGAGAGCTTTATTTGGG
AGAGTATTGATTACCCAACTGACACTCTACTTCCAGGAATGAAAATTGGGTTCAATTGGAAAAC
TGGGTTGGAATGGAAATTGACATCTTGGAATTCCAAAAACGACCCTGGAACCGGGGGCTACAGT
ATGAGGATGGTTTACAATTCAACTGCCACCCCTCTATTTGTTTTGTTTAAGGGTTTGAGCAAGT
ATTGGAGATCTGATCCCGGGCCGTGGCCGAATTTTGTAAGCAATGATGAGGAAATGTACAGTTA
TTTTACTCCGAGTGAAAACGGTTCTGTAGCACGAGCGGTGTTGAGTGATTATGGATTGTATCAG
CATCTGAAATGGAGTGATGCTGATGATCAGTGGGAGGAAACTTTTGCTGTACCAAAATATCGGT
GCGACAAGTACGGACAGTGCGGTGCTAACAGCATATGTAGCCCTGACAACGTTAATCTGTTTGA
GTGTGAGTGTTTACCTGGGTATGAACCGAAATCTGTGAATGATTGGAATCAGAGAAATGGGTCG
GATGGGTGCGTGAGCAAGCGAATTGGGGGGTCGAAATGTGGGAATGGGGACGGGTTTGTGACGG
TTCAAAGAGTGAAAGATCCAGATGCATCGATAGGAGCACAGTTGGTTAAAAGCATGGTTAAAAG
CATGAGTGCTAAAGAGTGTGAGCAAGCGTGCTTAAACAATTGTTCGTGCACAGCGTATATGAGC
ATGGAGTGGGAAGGGCGGATTGATTGCATGACATGGTATGATGATTTGATGGACATTTTAGTGC
ACACAGAGTTGGGACGAGACTTATATGTTCGTGTCGACAAAATTGAATTAGGTAGTGATTTTGT
TGGTCTGGTTCAGTGTCCTTACTAGTTCTGTATTTCATGGTTTTCTAATCCTTTGTCCAACTCG
AATGTGTAGCTAAGCATACCAACAAATCAAAGGGTTTTTTGAGGAGTGGCGGTTTGGCTATTCC
AATCGTTTCGGTACTGCTGGCATTGGTACTAATCATTGTGTTTGCCTGCCGGCGTCATAACAAA
AAGAGTAAAACAAAAGGTATGAGAAGTAGTCGTCCCCTCTGAGTTGTTTAATGGTTTGATCTAA
ATAAAAGCAATGCGATTTCATCTAAATGAATGTCTGCAATTGGTTTATGTGATAGCACAGACTA
CGTGGAGGTAGATGAACTTGAGGAAACTGGGAGACACCCCGAGTTGCAATATTTCGACCTGAGC
ACCATACTAGCGGCCACAGACAACTTCTCGCCCGTTAATAAACTCGGCCAAGGGGGTTTTGGCA
CTGTTTATAAGGTAAATCCCAATTTAGAAGTCCTGCACATTTTTTAACTGTATGATTTCTTCTG
AGCAGTATAATTTTGTTCTGTTTCTTCAAGTCTCAGAGTTTTTTTTTTTTTTTTTTTTTTCATT
TTAAAGCATGAAGGCCTAGTAGTAATTGTAATACCGATTCCTTGCTTCAGGGCCAGTTACCAAA
TGATCAGATTATAGCTGTAAAAAGATTGTCAAAAACTTCTGGACAAGGGGTTGAAGAATTCAAA
AATGAAGTTGCGCTGATAGCGAGACTTCAACACCGGAATCTGGTGAAACTTTTAGGCTGTTGTA
TAGAGGGAGAAGAAAGGATATTAGTCTTGGAACACTTGCCAAACAAAAGTTTAGACTACTTTCT
TTTTGGTATGTCTACAGGAATGATTCATTTATTCATACTGTTTCTAAAACTATGCCAAACATAC
TCGAAGCTTCATAGCGAGATATATAACATGTATTTTACATAAATAGAAATATCTTGATGCAGAT
CACAGAAGAAGGTCCTTGTTGGATTGGGATAAGCGTTTTGAAATCATCAATGGGGTTGCTCGTG
GGATTTTGTATCTTCACCAGGACTCGAGAGTTAGGATTATCCATAGGGATCTAAAAACCAGCAA
TATTCTTCTAGATGCTGAGATGAACCCGAAAATTTCAGATTTCGGCATGGCAAGAATATTCCAT
GGGGACCAACTGCAGGATGAGACCAACAGAATTGTTGGAACATAGTAAGAATTTACTGGTGCTC
AAACATTTATTGATGGTTTGAATCACCAAATATTCACATTACACATTCAATAACTATAAACTCT
TATTTGGCTTTAACATTTTCTTTTCATCATATGTAGTGGTTATATGTCACCAGAGTATGCAGTG
TTCGGGAGATTTTCAACAAAGTCGGATGTCTTCAGTTTCGGGATCATATTAGTGGAGATTGTAA
GCAGCAAGAAAAACAATGGTTTATATCAGGAGGATCATTCCATGAACTTGATAGGACAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2018a