Detail information of BGIOSGA017032_circ_g.1


General Information
CircRNA Name BGIOSGA017032_circ_g.1
ID in PlantcircBase osi_circ_014725
Alias Chr04:30730765_30731438(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28874266-28874937  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA017032
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA017032-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCTGTTCAATGGTTAATCAGCTACAATGAGGAGCAATGCCATGAATCTTTTCTAATTGGCC
TTCATGACTGCATGATTTGTTTCACGGAGCGTGCAGgatgctggcactagaggcaatttatgga
gacaatataagcattttaagtgcaaaggatggactacgttgtttccaggtacatatgtttatta
gtcacata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGCTGGCACTAGAGGCAATTTATGGAGACAATATAAGCATTTTAAGTGCAAAGGATGGACTA
CGTTGTTTCCAGGTACATATGTTTATTAGTCACATATGATTCATTATCCGTCACAGACCAACAA
AACTTAAATACCTTTTCTGTTGTCACTTGTTTGAAGGTCCATGTGCACTGCGAAATTCCTGATG
GCATCAGTGTATCCGCAGAGCTATCTCGGGATGATAATCGTGACCAGAACAGTCGATTCTTTGA
CACATTCAGCGTCCAGCACTTGGCTCCAATTTCATTCACATGCCTTATGCCTCCATCATACCCA
AGCCATCATGCTCCGTACTTTACTCTCAGTTCACAGTGGTTGGACACTGTGAAAGTTTCCTCCC
TTTGCCTCATGCTGGACACAATCTGGTCACAACAACTTGGACTGGAAGTAGTTTATGGGTGGGT
GCAATGGCTGCAGAGCTCTGCACTTTCTCATCTTGGTTTTAATGATGGTATAGTCATACAACAG
CCTGATAGTATGATGGGTCCTGTGGATGTTCGTGTTGTTGCAGAGATTGTGTCCGTAGAATCTG
CTGTTCAATGGTTAATCAGCTACAATGAGGAGCAATGCCATGAATCTTTTCTAATTGGCCTTCA
TGACTGCATGATTTGTTTCACGGAGCGTGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021