Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d020516_circ_g.4 |
ID in PlantcircBase | zma_circ_009343 |
Alias | Zm07circ00049, GRMZM2G029223_C2 |
Organism | Zea mays |
Position | chr7: 119987173-119988329 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d020516 |
Parent gene annotation |
Kinesin-like protein KIN-7O |
Parent gene strand | - |
Alternative splicing | Zm00001d020516_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d020516_T001:5 Zm00001d020516_T002:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.162230669 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
119988236-119987331(+) 119988316-119987515(+) 119987224-119988304(-) 119988284-119988281(-) |
Potential amino acid sequence |
MNCKRYYSRFISRSSHCEGLPTVSLTICKNSAKTDTRTASQKSSTSLSSPFSLLSITMRNIV*( +) MQKQCQNRYSYSITKIFNFIVIAFFSTLDYHAKYSVRTTAIKIHVCLSDMPVGFSKRHEIHDLF RACNNFFP*(+) MTMKLKIFVMLYEYLFWHCFCIWSN*(-) MRGSANEPGIIPLAVHDLFQRIQEHMDREFLVRMSYMEIYNEDINDLLVPEHRKLQIHESIEKG IFVAGLREEIVTCAEQVMDFMSFGESHRHIGETNMNLYSSRSHTIFRMVIESREKGDDNEVEDF CDAVRVSVLALFLHMVKLTVGRPSQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020;Zhang et al., 2019 |