Detail information of Os03g0666500_circ_g.2


General Information
CircRNA Name Os03g0666500_circ_g.2
ID in PlantcircBase osa_circ_020898
Alias Os03circ21775/Os_ciR1279
Organism Oryza sativa
Position chr3: 26236647-26239930  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os03g0666500
Parent gene annotation Similar to Ras-related protein RHA1. (Os03t0666500-01);Similar t
o Ras-related protein RHA1. (Os03t0666500-02);Similar to Ras-rel
ated protein RHA1. (Os03t0666500-03)
Parent gene strand +
Alternative splicing NA
Support reads 2/10/2
Tissues leaf and panicle/root/shoot, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0666550-00:2
Os03t0666550-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAAAGCATGATCTTGGCACGGATTAGGTACTTGTGGCATGAGAATGATACTGCTTTATGCT
GCATTGCATCTTGTTTACTTGCTATGGTGTTCTCCTgtatgttttccttcctctcgccctccct
ctggttttatatgtgatgtcgctatgttatcttttcactatcctacgttgcaaaggtgaaatta
cctgtcac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3284
Transcript exons: 26236647-26239930
GTATGTTTTCCTTCCTCTCGCCCTCCCTCTGGTTTTATATGTGATGTCGCTATGTTATCTTTTC
ACTATCCTACGTTGCAAAGGTGAAATTACCTGTCACACAACTAATATAGGCAAATACTCTTGCC
ATTTCTATACGGTTTTACAATGGCATTTATCTTTTTACTGAGTTCTGCATATATCCCAATTTAA
ATGGCTGCATATATCCGGTGGATGTAGAGGCCGGGTAAAATATACCCTTCTCTAAAAAAAAAAA
AATCCCCGGGGAATGGTACGGTTGCAGGCTTACTCCATACATGTAGCCCACTGAATCTTTGGGT
GACCGGTTTGATTAGGAGTTATTGTCCTCTGTATTCATCTGCAGGAAGATTAATTTGATGCTAA
ACACGCCGGAGATCCGCTGTTGGACGGCGGCATGTACATCGTTGCAAGCGATTTAGTTGACCAC
ATCACTCGAGCCAGCTGCCGGAGGCATGTGCCACACAGCCACACTAGCCTCTTAAACCTTGCTT
TTTTAACTTTGGAGCAAATTATTCCACGCTGCATGTATATATGGAGTAGTGTATATATACATAC
AGCTTTGGAAGTGGAAGCAAACCAAAATGAATAGAAGAAATGCACGGTGGCTTTCTAGGCGACG
ATTGACATGATGCAATCACACTCGTCGTCCTTGCCGCTTGCTTCACGTCTCACCACGTAGGTGG
TTGTAGGTCTGGTCCACGCCGGTCGCTGGAGGCGAGACCGAGAGGCATCCATTGTCTCCCCCAC
ACACCTTAATTTGTCAGCGATCAGCCTCCAGTTTTATACTACTTGTCCATCTTCTCCCTTTGTC
GGTGGCTGTCCGACCAATTCGCTGCCGCCAATGGGTTATAACGGCCGGCGCTGCTGTCATCGCC
GGCCATTCGGGCTCAGCAGCAAGGCTGTTCGGTGTTGGTTGCGATCCGTTCCAGCCCAGTTAAT
ATAGGTAGCACGTAAGTGATAATGTCGTTTCGGCCCAAATAATATGGTCCAATTAGTACGGTTA
GTATGGGCCACATGATATGACCCAAGCTGTACAAATATTACAATCAATACGGTTACATGTGATG
TAGTTTAGTAGGATGTGTTACACCCTGTACTAAATTAACTTATTCTGTAACAGAGGAAGTAATA
CACTGGTAAAGGGCAGGATGTTGGATTGTGTTTTTATGAACTTGTATAAATTAATCTTGATCTT
TTAGTATTCCGTATTTGTTTACTACTGGCCTGCATGTGAGTCAGTCCCTTGTCACTGCATCAGT
GCGTCTGTCTCGTGACGATGTAAGCTGTAACGCTTTTAGCTGATTTATCAGCTCCGCCCAGTCA
CCGCACGACGACCCGCCGTCGGACACGGCTGTGCGCGCCGCGACGCCCAGCTCGTCCACCCTCG
CTCTCCTCGCCGCAGCGTCGTCGTCGCCCATCAGCCTACCCACCGCTCTCGCCACCGCCTCGGC
CGGCACCACCGCCTCCATGGCCGCGTTGCCGGCAGCCTCACGCACCCGCACGCCCACGCGGAGC
ACGTCGACGAGGAACACCTCGTTGAGGAACTGCTCGGCGCGCAATGGCCAAGTCGCGAGTGGCA
CGCCGGCAGAGATGGCATCCAGTATCGAGTTCCACCCGCAGTGGCTGAGGAAGCCGCCCACAGC
GCGGTGCGCCAGGATGTCCGCTTGCGGCGCCCACCGCCCGGCCACCACCATGCCGTGGTTGGAC
GCGCGCTCCTCCTGCTCTGTTACCTCCGCCGCCGTCGTCGGGATGACCCAGAGGAATGGCCGGC
CCGACGCGCGCAGGCCAGCAGCGAGTTCCGTGAGCTGGCTCGCGCCCATCCCACATGTGCTCCC
GAAGCACGCGTACAACACCGACCCTGCCGGTTGGCCATCGAGCCATTGCAGGATAGGGTCCCGG
TCGACGCCGTCGGCAGCGATGCCTTTGCTGAGTTTGGAGACGGCGGCGCGCGCTGGGCCGACGA
GGAACACCTTCTTGGGAGACCCGTCCAGGCTACGGTAGTACTCGGCGAAGTCGGCCTCGAGCGC
CGCGAAGCTGTTGAAGACGACGGCGAAGCTCTCGGCCTCGGCGGCGCGGAAGAGGGGGAGGTGA
ACGAGGGCCTCCTCGTTGACCTGCACCCCGCGGAGCTTCACGGGGAGCGGGAAGCCCTCGTCGA
CGCCGAACGGGTCTGGCATGGCCTCACGTAAGTGGAGGTGTCCATGGATCGCCACCATGGCGGC
AGCGGCGAAGGCACCGATGGTGTGGAACGTCACGTGCAGCACGCCGCACTCGCGCGCCACACGC
GGCGCCCAGTGGAGCACCGCGTCCGAGACGACTGTCACGGTGGCGGTGGAGCCCCCTTCGCGGA
GAAGCCCACGCACCGCCGCCCCGAGTGCCGGCGCCAACGCTTCCTCCGCGGCGGCAAAGAACGC
CGCGGCCGAGACCTCGCCCGGGAGGAGGGAGAAGTCGTTGTGCCCACCCGGGAACCCGAACTGC
GCCACACGGACCGGCACGGATGCCGGGGCCATTGCTGCGAAGTGGCGCGTGGTGACGATGGTTG
CGGCGGTTCGCCCTCCGCGGTGGCAGGCGTCGGCTTCGGCTGCCATTGCTGTGACGGGGCCGAA
GTGGCTGCGCGAGAGGAAGGGCACGAAGATGAGGTGAAGCGGGGGCGTGTCGGCGTTGGCGTCG
CAGCATGCAGGCGCGCCGTTCGTGGTGTGCATGGTGGGTGTTCGATCGTTTGCTCGGTTCGTCT
GGTGAGCTGGTTGAGTTGGGCTCTGTGTCGTCGTGGAGGGAGCGGGATGATCAGGCAGTTGGGC
TGGACCTCCTCTTATTTTGGGAGGGAGGATGGAATTGCGTGTGAGTTAAGGTCCAGGAATTCAT
GGCCACAGGAAATGCATGCACGGCGCCTCGGCGTGTAACGCGTGTTTTTGTGTTGCTAATCTGC
AGCCAACCTTCATTTCAGTTTCAAACATTACAAAACTATGTTCATAGCAGAACTCAGTTTGTTT
AATTGAAAATTGTATTGTTAGGAAAAAGATTACGCATTACAAAACTATGGTTAATGGTGAATCC
TGCAATACGTATTTCATACAGCCAATCTTGGTAATCCTCTGTCTGAGGTAGTTGCTACTGCTAT
TTACTATCAGCATGCTTGTGCCGTGTTTTTTTGGTATAGTTTTTGAGGAAAAAAAGCATGATCT
TGGCACGGATTAGGTACTTGTGGCATGAGAATGATACTGCTTTATGCTGCATTGCATCTTGTTT
ACTTGCTATGGTGTTCTCCT

Genomic sequence GTATGTTTTCCTTCCTCTCGCCCTCCCTCTGGTTTTATATGTGATGTCGCTATGTTATCTTTTC
ACTATCCTACGTTGCAAAGGTGAAATTACCTGTCACACAACTAATATAGGCAAATACTCTTGCC
ATTTCTATACGGTTTTACAATGGCATTTATCTTTTTACTGAGTTCTGCATATATCCCAATTTAA
ATGGCTGCATATATCCGGTGGATGTAGAGGCCGGGTAAAATATACCCTTCTCTAAAAAAAAAAA
AATCCCCGGGGAATGGTACGGTTGCAGGCTTACTCCATACATGTAGCCCACTGAATCTTTGGGT
GACCGGTTTGATTAGGAGTTATTGTCCTCTGTATTCATCTGCAGGAAGATTAATTTGATGCTAA
ACACGCCGGAGATCCGCTGTTGGACGGCGGCATGTACATCGTTGCAAGCGATTTAGTTGACCAC
ATCACTCGAGCCAGCTGCCGGAGGCATGTGCCACACAGCCACACTAGCCTCTTAAACCTTGCTT
TTTTAACTTTGGAGCAAATTATTCCACGCTGCATGTATATATGGAGTAGTGTATATATACATAC
AGCTTTGGAAGTGGAAGCAAACCAAAATGAATAGAAGAAATGCACGGTGGCTTTCTAGGCGACG
ATTGACATGATGCAATCACACTCGTCGTCCTTGCCGCTTGCTTCACGTCTCACCACGTAGGTGG
TTGTAGGTCTGGTCCACGCCGGTCGCTGGAGGCGAGACCGAGAGGCATCCATTGTCTCCCCCAC
ACACCTTAATTTGTCAGCGATCAGCCTCCAGTTTTATACTACTTGTCCATCTTCTCCCTTTGTC
GGTGGCTGTCCGACCAATTCGCTGCCGCCAATGGGTTATAACGGCCGGCGCTGCTGTCATCGCC
GGCCATTCGGGCTCAGCAGCAAGGCTGTTCGGTGTTGGTTGCGATCCGTTCCAGCCCAGTTAAT
ATAGGTAGCACGTAAGTGATAATGTCGTTTCGGCCCAAATAATATGGTCCAATTAGTACGGTTA
GTATGGGCCACATGATATGACCCAAGCTGTACAAATATTACAATCAATACGGTTACATGTGATG
TAGTTTAGTAGGATGTGTTACACCCTGTACTAAATTAACTTATTCTGTAACAGAGGAAGTAATA
CACTGGTAAAGGGCAGGATGTTGGATTGTGTTTTTATGAACTTGTATAAATTAATCTTGATCTT
TTAGTATTCCGTATTTGTTTACTACTGGCCTGCATGTGAGTCAGTCCCTTGTCACTGCATCAGT
GCGTCTGTCTCGTGACGATGTAAGCTGTAACGCTTTTAGCTGATTTATCAGCTCCGCCCAGTCA
CCGCACGACGACCCGCCGTCGGACACGGCTGTGCGCGCCGCGACGCCCAGCTCGTCCACCCTCG
CTCTCCTCGCCGCAGCGTCGTCGTCGCCCATCAGCCTACCCACCGCTCTCGCCACCGCCTCGGC
CGGCACCACCGCCTCCATGGCCGCGTTGCCGGCAGCCTCACGCACCCGCACGCCCACGCGGAGC
ACGTCGACGAGGAACACCTCGTTGAGGAACTGCTCGGCGCGCAATGGCCAAGTCGCGAGTGGCA
CGCCGGCAGAGATGGCATCCAGTATCGAGTTCCACCCGCAGTGGCTGAGGAAGCCGCCCACAGC
GCGGTGCGCCAGGATGTCCGCTTGCGGCGCCCACCGCCCGGCCACCACCATGCCGTGGTTGGAC
GCGCGCTCCTCCTGCTCTGTTACCTCCGCCGCCGTCGTCGGGATGACCCAGAGGAATGGCCGGC
CCGACGCGCGCAGGCCAGCAGCGAGTTCCGTGAGCTGGCTCGCGCCCATCCCACATGTGCTCCC
GAAGCACGCGTACAACACCGACCCTGCCGGTTGGCCATCGAGCCATTGCAGGATAGGGTCCCGG
TCGACGCCGTCGGCAGCGATGCCTTTGCTGAGTTTGGAGACGGCGGCGCGCGCTGGGCCGACGA
GGAACACCTTCTTGGGAGACCCGTCCAGGCTACGGTAGTACTCGGCGAAGTCGGCCTCGAGCGC
CGCGAAGCTGTTGAAGACGACGGCGAAGCTCTCGGCCTCGGCGGCGCGGAAGAGGGGGAGGTGA
ACGAGGGCCTCCTCGTTGACCTGCACCCCGCGGAGCTTCACGGGGAGCGGGAAGCCCTCGTCGA
CGCCGAACGGGTCTGGCATGGCCTCACGTAAGTGGAGGTGTCCATGGATCGCCACCATGGCGGC
AGCGGCGAAGGCACCGATGGTGTGGAACGTCACGTGCAGCACGCCGCACTCGCGCGCCACACGC
GGCGCCCAGTGGAGCACCGCGTCCGAGACGACTGTCACGGTGGCGGTGGAGCCCCCTTCGCGGA
GAAGCCCACGCACCGCCGCCCCGAGTGCCGGCGCCAACGCTTCCTCCGCGGCGGCAAAGAACGC
CGCGGCCGAGACCTCGCCCGGGAGGAGGGAGAAGTCGTTGTGCCCACCCGGGAACCCGAACTGC
GCCACACGGACCGGCACGGATGCCGGGGCCATTGCTGCGAAGTGGCGCGTGGTGACGATGGTTG
CGGCGGTTCGCCCTCCGCGGTGGCAGGCGTCGGCTTCGGCTGCCATTGCTGTGACGGGGCCGAA
GTGGCTGCGCGAGAGGAAGGGCACGAAGATGAGGTGAAGCGGGGGCGTGTCGGCGTTGGCGTCG
CAGCATGCAGGCGCGCCGTTCGTGGTGTGCATGGTGGGTGTTCGATCGTTTGCTCGGTTCGTCT
GGTGAGCTGGTTGAGTTGGGCTCTGTGTCGTCGTGGAGGGAGCGGGATGATCAGGCAGTTGGGC
TGGACCTCCTCTTATTTTGGGAGGGAGGATGGAATTGCGTGTGAGTTAAGGTCCAGGAATTCAT
GGCCACAGGAAATGCATGCACGGCGCCTCGGCGTGTAACGCGTGTTTTTGTGTTGCTAATCTGC
AGCCAACCTTCATTTCAGTTTCAAACATTACAAAACTATGTTCATAGCAGAACTCAGTTTGTTT
AATTGAAAATTGTATTGTTAGGAAAAAGATTACGCATTACAAAACTATGGTTAATGGTGAATCC
TGCAATACGTATTTCATACAGCCAATCTTGGTAATCCTCTGTCTGAGGTAGTTGCTACTGCTAT
TTACTATCAGCATGCTTGTGCCGTGTTTTTTTGGTATAGTTTTTGAGGAAAAAAAGCATGATCT
TGGCACGGATTAGGTACTTGTGGCATGAGAATGATACTGCTTTATGCTGCATTGCATCTTGTTT
ACTTGCTATGGTGTTCTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.377989205
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA