Detail information of Os01g0855900_circ_ag.1


General Information
CircRNA Name Os01g0855900_circ_ag.1
ID in PlantcircBase osa_circ_004860
Alias Os01circ28042/Os_ciR448
Organism Oryza sativa
Position chr1: 36951210-36952311  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method SMALT, Segemehl, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2/70/3
Tissues leaf and panicle/root/seed, pistil
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAGTGAAGACATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTC
GATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAGgagcgccgattcagtggcttcaaccata
aatttttgctgccaataacagcaataagctccctgatattacccaggtttgcttcccatcattt
ttgtcaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 153
Transcript exons: 36951210-36951245,36952195-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTCGATCTTCAGAATTATCCAGTGAAGA
CATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGAT
GGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 172
Transcript exons: 36951210-36951314,36952245-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTCTTGCATATACTTTGGCCTCTTG
AAACTCTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 231
Transcript exons: 36951210-36951270,36952142-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
AGATGATAATATGACTTACTTATTTGGAGTCTCTGTTGTTGTTGGGGTACCTCGATCTTCAGAA
TTATCCAGTGAAGACATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACT
CTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 232
Transcript exons: ,36951214-36951356,36952224-36952311
GCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGATATT
ACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAATCAGT
CCTGGAAGCATTGGCATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACT
CTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 243
Transcript exons: 36951210-36951289,36952149-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCGATAATATGACTTACTTATTTGGAGTCTCTGTTGTTGTTGGGGTACCT
CGATCTTCAGAATTATCCAGTGAAGACATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGG
CCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 255
Transcript exons: 36951210-36951346,36952194-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGCCTCGATCTTCAGAATTATCCAGTGAAGACATTTCTTTAACTCAGATCTTGCTTG
CATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 261
Transcript exons: 36951210-36951269,36952111-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCTCAT
AGGAGAACTAATTATATGTATTACAGATGAAGATGATAATATGACTTACTTATTTGGAGTCTCT
GTTGTTGTTGGGGTACCTCGATCTTCAGAATTATCCAGTGAAGACATTTCTTTAACTCAGATCT
TGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACCCTTTGGAGA
GAAAG

Transcript length: 267
Transcript exons: 36951210-36951318,36951337-36951437,36952255-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCAGTCCTGGAAGCATTGG
CAACAGTACGCAGCTATGGTTGCTGTAATCAGAGAAGTCAAGCACGCATGCATGAGCAGAAAAT
GGAAGAGACGAAGCTAGACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACCCTT
TGGAGAGAAAG

Transcript length: 273
Transcript exons: 36951210-36951398,36952228-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGAAGCATTGGCAACAGTACGCAGCTATGGTTGCTGTAATCAGAGAAGTCAAGCCTT
TAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAG
ACCCTTTGGAGAGAAAG

Transcript length: 277
Transcript exons: 36951210-36951369,36952195-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGAAGCATTGGCAACAGTACGCAGCCTCGATCTTCAGAATTATCCAGTGAAGACATT
TCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCA
TCAGACCCTTTGGAGAGAAAG

Transcript length: 279
Transcript exons: 36951210-36951330,36952154-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGTATGACT
TACTTATTTGGAGTCTCTGTTGTTGTTGGGGTACCTCGATCTTCAGAATTATCCAGTGAAGACA
TTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGG
CATCAGACCCTTTGGAGAGAAAG

Transcript length: 280
Transcript exons: 36951210-36951326,36952149-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGGATAATATGAC
TTACTTATTTGGAGTCTCTGTTGTTGTTGGGGTACCTCGATCTTCAGAATTATCCAGTGAAGAC
ATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATG
GCATCAGACCCTTTGGAGAGAAAG

Transcript length: 287
Transcript exons: 36951210-36951359,36952175-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGAAGCATTGGCAACCTCTGTTGTTGTTGGGGTACCTCGATCTTCAGAATTATCCAG
TGAAGACATTTCTTTAACTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCA
AGAGATGGCATCAGACCCTTTGGAGAGAAAG

Transcript length: 317
Transcript exons: 36951210-36951354,36952140-36952311
GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGAAGCATTGGATGAAGATGATAATATGACTTACTTATTTGGAGTCTCTGTTGTTGT
TGGGGTACCTCGATCTTCAGAATTATCCAGTGAAGACATTTCTTTAACTCAGATCTTGCTTGCA
TATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACCCTTTGGAGAGAAAG

Genomic sequence GAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCAATAACAGCAATAAGCTCCCTGA
TATTACCCAGGTTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCAAT
CAGTCCTGGAAGCATTGGCAACAGTACGCAGCTATGGTTGCTGTAATCAGAGAAGTCAAGCACG
CATGCATGAGCAGAAAATGGAAGAGACGAAGCTAGAGGGTTTGGGACTGATTCCAGAATCATCG
GCCAATTCAATTTCAGTAGCTTGTGCTTTAGAAATCTTCCGTTGTGAAGACATTAGATGACTTG
TCTCTGGTAGTTGGAGCATGTGGTTGTGTTCAATAGATAAATCATGCAAGGTGTAAAGACCAGA
ATCCCTATCTAAGGTAATTCCCATTCGGGCATCACAACCTGTTCTTGTCTCAGCTCGGGGAAGT
TTTGTCAAGTGATCTCTCTTGTCCTGTGCTCGGTAGCCCTGATTGGAACATACAAATCTACATG
ATGTAACTACCTTGTCAATTTTACTTGTGTTCTCATACTTCTTCCTAGCATTGAATCCTACTTG
ACCTCCATAGAATACCCAAAAGTTCCAAGCCTCATCAGCACAACTAAAATTCATGCCTATTCGA
GGTATCCAAGAAGGTGTGTTATTTGTGCTGCAAAACATGGCATCGCTTCTTATTTTACCAAACA
TGATTAATGTAAGATATGAAATGAAATGGTCGGACTGGATTTAGATGGTACATATGGAACTATG
AATCAGATCCTGATATGGCACTCACAAGTTTGATGACTCAGAAGGAGCAGGTTTTTCTTGCAGC
GATTGCTTTCGTACTAGCGTCTGATCTCCCTCAATCTCATTGCTTCAATCAATTGTAATATTGT
TTTAATCATAGGAGAACTAATTATATGTATTACAGATGAAGATGATAATATGACTTACTTATTT
GGAGTCTCTGTTGTTGTTGGGGTACCTCGATCTTCAGAATTATCCAGTGAAGACATTTCTTTAA
CTCAGATCTTGCTTGCATATACTTTGGCCTCTTGAAACTCTCGATCAAGAGATGGCATCAGACC
CTTTGGAGAGAAAG
Conservation Information
Conserved circRNAs osi_circ_010941
PMCS 0.437456458
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA