Detail information of BGIOSGA016663_circ_g.1


General Information
CircRNA Name BGIOSGA016663_circ_g.1
ID in PlantcircBase osi_circ_014488
Alias Chr04:25109990_25110676(MH63RS2), Chr04:25132144_25132830(ZS97RS2), Chr04:25109990_25110676(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23060361-23061047  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA016663
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016663-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGCGACATTCACAAATCATTTTTCAGCTTGAAAAGTTAAGTGATATACAAAGCCAACCAGAG
TCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAGggctgtgtcttggtccatggtcggagca
tggagaacggactggtggattttatgcctgtaaccgttatgaggcagcaaggcaggaaggagcg
gtacagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTGTGTCTTGGTCCATGGTCGGAGCATGGAGAACGGACTGGTGGATTTTATGCCTGTAACCG
TTATGAGGCAGCAAGGCAGGAAGGAGCGGTACAGTTCTAATCTGAGATATTTTCTTAATACTTT
ATTATTTTTATTTAATATTGTGGTTAATTTGTGCTGCTTCGCACTGGTTACAGTATGATGAATC
TGAAAGGAGAAGAGAAATGGCAAAGAACTCGCTTGAGAGATATACACACTATTATGAACGGTGG
GCAGCCAATCAGTCGGTAAGTTATTGGGTACAAGAAAAGTTACCTGAACAAAGCATTGTGTTTT
ACATAAGTAGTAAAAAAGATTTCCAATCAATACTCAAGAAGAACTTTTCTGGTTTCTTAATATC
TTCTCGTTATGCAGTCGAGGCAAAAGGCATTAGGAGATCTGCTGAGTTTGCAAAACGACAAGGT
ATATAAATATGATACTTTATATTTATCTCTCCTTTATCCTCTTTATATCCAATTTCACCCAAAA
GTACTGAAGCCATGTTAGGTTCATGTATTAATCATTTATAATACAGCTACTTCAGCCTGTCCAG
AACATATGCTAACAGCGACATTCACAAATCATTTTTCAGCTTGAAAAGTTAAGTGATATACAAA
GCCAACCAGAGTCACAGCTCAAGTTCATCATAGAGGCTTGGTTACAG
Conservation Information
Conserved circRNAs osa_circ_024353
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021