Detail information of BGIOSGA035194_circ_ig.1


General Information
CircRNA Name BGIOSGA035194_circ_ig.1
ID in PlantcircBase osi_circ_008976
Alias Chr12:15334801_15336021(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 11158201-11159421  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCTCCTGCTGTTCCCAAGTCAGCTCCAACTTTTGGAAGGGGCCGGCTCAACCATGTCACTGC
AGAAGAAGCAACCGACGCACCTGGTGTCGTACTTGGgatgacacatactcgctctatggctgct
cttactgatgatgccaatggtgagggagcgagtcagcctcgcactggcctacattcttctagac
gtgccggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGACACATACTCGCTCTATGGCTGCTCTTACTGATGATGCCAATGGTGAGGGAGCGAGTCAG
CCTCGCACTGGCCTACATTCTTCTAGACGTGCCGGGGGTAGTCGCCGTGCTGCCACTGCAGAAC
AGCATGATGATGAACTATCTCTTGCTCAACTCCTGGCTAATCAAAACCGACTTTTTGAAAGGAT
GGTAGTGAACTCTGAAAACATGGGGGCTGCCATGGCACAGCAGGCCAATCAAGCACCCTCCAAG
CTAGCAGATGTTCAACGAACACATCCACCTCATTTCTCCTCTGCGGCTGATCCACTCGCAGCAG
ATGATTGGCTTCGTGATATTGAAATCAAGCTGAACCTTTGCCGGTGTGATCCTGTAGAGAAGGC
TACCTTTGCTGCTTACTACCTGCAAGGTGCAGCAGCTGCTTGGTGGGAGACATACAAGACTCTC
ATTCCTCCTGACGAGCCAATCACTTGGACTGTTTTCCGTGAGGGATTCAGGTCTGCTCACATCC
CTGCTGGTCTCATGGAAATCAAAAAGAAAGAATTTCTTAACTTGAAGCAAGGAAACATGCCCTT
CATGGAGTTCATGGAACGCTTCAATTATCTGGGTAGATATGCCGCTTCTGACTTGAACACTGAA
ACAAAGAAGGTTGAGCTATGCAGAGATCGTCTTGCACCTGAACTCAAGCATGCTCTTGCTGCTC
ATGAAATCACCAGCATGAAGACACTGGTTGATAAAGCCCTTCGTGTTGAATCAAGTGAAAAGGA
AGTGGTTGAAGACCGTAAGCGTAAGTGGGCTGCAAAGAAATTTGCTGGCAGCAGCAGTTCCACT
CGGCCTCGTCTTGCTCCATCTCCTGCGGTTCGTCCTATGGCACCTCAGCCACCTCGGCAGATGT
ATGTGCCTCCACGTCCGCAAACTCAGTTAGTTCGTCAAGTTCCTCGCGCAGTTCAAGCTGCGGG
AGATGCATCTCGTAATGCCAATGTCACCTGCTACAATTGCGGCAAGAAGGGGCATTATTCTCCT
AGCTGTCCTTATCCGAAGACTGGAAAATCTGGACCGTACTCGCAGGGAGCACCGCAGCAGCCTC
GTGGTCCTCCTCAAGTTCAGCCTGGACAGCGTGGAGCTCCTGCTGTTCCCAAGTCAGCTCCAAC
TTTTGGAAGGGGCCGGCTCAACCATGTCACTGCAGAAGAAGCAACCGACGCACCTGGTGTCGTA
CTTGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021