Detail information of BGIOSGA021046_circ_g.2


General Information
CircRNA Name BGIOSGA021046_circ_g.2
ID in PlantcircBase osi_circ_016313
Alias Chr06:21562723_21565430(MH63RS2), Chr06:21562723_21565430(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 21889525-21892232  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, find_circ
Parent gene BGIOSGA021046
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021046_circ_g.1 BGIOSGA021046_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA021046-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCAGCAGCGTCGGCAGCGCGCGGCTGCCCACGTGGCACCTCGCCTGCACCATCAGCTCCTCG
AACCGCACCTCCACCGTCGGCAGCTCGATGCCCACCccggtggtgacgcgtttcttctgaccac
cggagatccccctctgcatctggtcgccgacgatcgtgtccgcgcatatatccaatcccagtat
ctgctccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGTGGTGACGCGTTTCTTCTGACCACCGGAGATCCCCCTCTGCATCTGGTCGCCGACGATCG
TGTCCGCGCATATATCCAATCCCAGTATCTGCTCCCAAGAAAATTCAGTCAAAAAGAAATAATT
TTCACCAGCTCCAGTTGCTACTTGCAACCGTCGGGATCAAGACAGTTTAAATTAACATGACTAA
TTCCTGCTAACCCCATGTCAAGCATGGGCTTAATGCCCCTGAAAGCTACTGTCACCTGCCCCCC
CCACCCCCCCCAAAAAAAAAAAAACACACACATTTCAAACTTTACCTACCATCCATCCTGCCCA
ATGTAATTATGTTACTACGTGGCCAGTGCTCGGAAACTCGCAGTAAAGCTGATAAGAAGCAGAA
GCTTTGGCTGGGCATATCAACAAACATGTGGTGGGCATCATCACCACGGGTGCGCGCCATTTCC
ACCAGGCCAAGTGGGTGCACCAACCCCCCAATCCCCCCTCCCAAAGCTACAAGGATGCCCCACC
AAGAACTCAATTCGAGCTCCATCTCCCAATTAGCAGTAGGTGAGGAGGAGGGAGGAAGAAGAAG
AGGGAAGAAAGAACCATCCTTTGTGGTCAAGACACAAGAGAGTCAGCAAACAAACCCACTCCCT
CCTGCCTGCTGCTGCTGCTGCTACTAATCAGTAGGAGAAGTATGTGCCCAAGAATCATAGTAGT
GGACTTGGTGGTTGATTGGATCCTTGAAAAAAAAAAGAAAAAAAAATTCCCCTTTTCCCATTTG
GTGTGCAGTGTTCACCAACCTGGGTCATGGTTAGTACTAGTTGTTTGCTTGTGGACAAATGTGC
AACCAAGTCCTATATGATTTGCCCATGATTGCTTGGAATTGGGATGGTTTGTCCCTTGTGTTTT
CCAATGTCAAGACTGAATCTTTCTTTCTTTTTTTTTTTTGCCGGTTTGATGACATAATGGTGAG
GAAATCTTGCGCTAATCGCTTGTTAATCCATGTGTGAATGATGTTGCTATCAGCTTAATTTTGT
AGTGTTTCTCCCTTGTGCTTTCTCTATCAAGGCTGAATCAATTTTTTTTATTGGAGAACATAAT
GATGAGGAAATCTTGTGCTAAATTGTTTGTTGTTAAATCATATTATGTCAATGATGTTACTATC
AGCTTAATTTGGAGTATTATGGAAGCGAAAAATAATAATAGCAAATTCAACAAAGTCGTGAAAA
GCTCATTACTCTGAGGGTGTAATCTGTCTGAAGGCTGCTCTCGACTCCTTCCATCGAAGTAGCC
TGCAAGGAGGAATTAATCATTCGTCACGTAAACAAATCAAAATTAATTATCTTCGAAACAAAGC
ATAGTTTTTCCTCTTTTTTTTCGATTGAAACAAAGCATAATCAGCAACTACTATCACCACTATT
AACACCCCATGTGGTACACGTACGTCTAACCGATTGTGAGATGTCGTTTTCGCAAAGATCGTGT
TTGTCATTAACCCTGCTCGAATCTCATTTTCATAATTTCATGTCCTTTACGAAGGTACAAATTG
CACGGAAAATATATAGTTAGATTCCTGTGGAAATTTCCAGTGACCACTGTATATAATAATACAA
GGACCATCTGATTTAGACCCTGCAAACTAAAGTGAGTGTACTTGTACCATGTGCGACTTTAATT
AAGCTGCTAATCGAAATAGTAGTAATTAATCACTCATTATCAACAAAAAAATTAATCACTCCAG
TTAATTAATTAATTACCTTCATGAAGAGGTCGACCTCGGGCTCCGGCCGGATGCCGGCCTCCTT
CTCCCTCCTCGCCAGCTCTGTCAGAAGATCTGCACGGTCCATTTTCCATCCAACGGTCAGGATT
GATCGATCGAATTAATCTTGAAAAATTAATTAATTATGGGACAATTGTCAGGTATAAATATAGT
ATTAATTGTAATTTGGTTACATTATAGCTACAATACAATTTATATATAACTTTCAATAAAAATC
CCGCAGTGACACGCTATTTTCGTGAAACGGAGGTCGTGAGACTGAATCTCCTCACCCATGTGCG
CGTTATTTTTTTCCCCTTTCTAACTTGCATGAATCTTAAGATAAATCCAACGGTTTAAAATTAT
TTAAAAATTAAATTATTGTTAAATGTAAGTTATAATATAATTACACTCAACAGTAAAAAATTAT
CGATAAACGTACAACAAAATTATTAATAGATCGTTCATCATCATCATCATGATGAGGGTGCGAG
TAATTGCACGTACCGTACTTGGTGCCGACGCCCTGGCACCTGGCCGAGAAGTCGAGCGTCTCCT
TGACGGTCATCTCGCCGACGTGCACGTCCGTCTGGCTGATGTACGCCGCCGTCTTCTGCGCCAC
GAACTCCTCCAGCTCGAACCCGTTGTACGTCACCTCGCCGCCGCGCCGGAGCGACGGGTCCAGC
TTCCCGGCGAGGGCCAGGAGGAGGGTCGTCTTCCCCGACGACGGCGGGCCCAGCAGCAGCGTCA
TCCGGGAGGGCCGGACGGCGCCGGAGACCCCCCTGAGGATGGTCAGCGTCGCCTGCCGCCCCGG
CCGGACGCCGACGAGCCCCAGCGCCGCCTCCGCGATGTTGCGCGCCGTGTTCAGCAGCGTCGGC
AGCGCGCGGCTGCCCACGTGGCACCTCGCCTGCACCATCAGCTCCTCGAACCGCACCTCCACCG
TCGGCAGCTCGATGCCCACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021