Detail information of Zm00001d052349_circ_ig.1


General Information
CircRNA Name Zm00001d052349_circ_ig.1
ID in PlantcircBase zma_circ_008182
Alias zma_circ_0001620
Organism Zea mays
Position chr4: 187841802-187846650  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGCAAGGAAGCGGTGGTTTGTAGCCGGGACATGTGATGGTTTCATCCATGTGTATAAGTATG
AAACAAGAATAATGGACTGCATAAAGAGATTCAGAGgtttgaggcagtccttgactgtcgttat
ggaggacatgtatggggcattgcatgtttgatgggatcaaaaagaaggtaatcaatttcgtatc
cctcattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGAGGCAGTCCTTGACTGTCGTTATGGAGGACATGTATGGGGCATTGCATGTTTGATGGGA
TCAAAAAGAAGGTAATCAATTTCGTATCCCTCATTTTCTTGTGCATAATAAGAGCATCACTAGC
TAAGTTTAGTGTAAGTGGAAAATAATCAAATAATATAGAATACACTGCTTAATTTATCAACTAA
AATAGTTGTGTAAATTACCAGGGTTTATGGACGACCTCACATAATGTGAGGTTCTCTTCCAAAA
CAACAAAATCTTGCATTACCATGTTAGCTCATAAAACCCACACACAAAATGTGATTAGATCTTC
TAATTTTCTAAGAAAGAATTTAGTACTAGTACTTTTATAACGAGTGAGGAGCCTTTCCTTATTT
GCATTGTTGATGCGTACTACAAGCAAAATTTATATCGAACCATGCCAAAAGCAACTGCCGATCA
AATCACCATGTAGGAGCAAATTTATTTATTTATTTATTGTATTCTTGCAATGCACCTTTTGAAT
TATTCTCACTTCCTATTATGCCAAAGCTGTAGACCAATGGTGTTTTTGTCGGATAGGTTTGTAA
TTGGACAAGAAACTGCATTAACAATCCTGGATGTTGGTGACCAAGAATGCCAGGACATGAGACA
AGAAGGCACAAGTTCTGAGGTGAGCTCACTAGATGAAACTTACTATAAAGCTACATGTTGTTGT
GTCCACACATGAAAACACTAGACCATGCATATCGCCATAATATTTTCTATAAATCCACTCTTTG
ATAGTTTGACACATCGAAAAGCGAGATGTGTGGTTGATGGTGGTGAGTATGCATTACATGCTTG
TGTTCCACAACCAAAGACTACCCAACGTGCAACGTAGTAACGGTGGTCCCTGCACTGAAACTGG
CATATTTTACAACCTTGTTTTTCTAGTATTTGGTTGGGTCCAACCATTCTTCGTTCTTATATCA
AACTACATAGCTGAAGAACATGATCAATCTCTCTTTAATTTCTTGATTAATTAGGCTGTGATCA
TGTGGAAATATGGAGGTCGTCGTTAATAACCACCCTGGTAATGTTCTGCAGGTGATAACCCCAG
GGTCAAGCGAGCTTTTGCTTGACGTCCACCCGCTGACACTCCACTTTCCCTTCCATGCCCACAA
GTTGATCCCGTGCACGCTGCACCTAACAAATAAAACAGATGAACATGTGGCTTTTAATCTTAGT
ATAGAAGACGGAATGGAGTCTTGGCAGCAGATCTTTGTAAGGATGCCCCTAAGTGGAATTGTGC
CACCAAAATCCACTTACACTCTTGTTGTCACAATGAGGGAGCTGACGTATCTACCAACACAAAA
CTTTAATTTGACCCTGCAGTCTAATATATGCGAAGATAGGTACATCTATTCATTTATGAGCCTA
TCAGAATCTGATCAGTTTTTTGAGGATTTAAAGGAGATAAGGAATGTGGCGCCGCCTCAGGTGA
AACTGAAAGCAGTTTTTTCTCTGCAAGGACAGACAACGTTTGAGGTGAGTCTATATATAAATGT
GTGTATATATATGTGTGTTTGCGTGCGCGCGGCCAGCTCTATTTGTCACCTAGGGTGAAGCTTC
ACCCAGTCAGTAATTTCCGGTAATGACTGAATATTGCTCAGTTATTACCGATAATTAAGATAAG
AATAGGTTTTGTCTGTTTTTCCTTTGTTTTTTTGCCTGTTATGGCATTGTACTGTGGTCCACTT
CGGACCTTTCTCTCTTTCAATATAATGATGCACAGTTCTCCTACGCGTTCGCGAAAAAAAAAAT
TACCGATAATTATTGAAGATCATTCAGTAATTACCAGTTGGGTGAAGCTTCACCTAGGGTGACG
AATAGCGCGAGCGCGCACGCACACACACATATATATACATACATATTTTCTGCTCGTGTTTACC
ATCCAAAGCTGTCACTTCTGTTTGTATCAGTTTTATTATGCTAAACTAGTAAATGTCTAAAACT
CGACAGTTGTTTTGTTGTCATGATGGCTTTATCAAGAATGCCATGCTAATTGCCTGATATTCCT
GCTGTTTCGGCTTCTTTCCTTTGTCTTTGAGTTTTCATGAAATCAGAAAATTAAAGATCCCAGG
AAAAATAATGATTTCTAAAGTAAATATAATAAGTGTCAAAACTTGCAGAACGGATCGTCAACTG
GAGAAAACTTAGTCCAACCTTTAATTAACATATGGACTTTGTTCAACCCTGCCAAGGATTTTTC
TAGTATGCTGATCTCTCTAGATGCTGATCCAACAGAGTCATGGTAGGTGCACATATAGCATAAT
ATTGATATTTAAATAGTTACTCATTTAATTTGTTCAAGTCAGTCAGTTGGATGCGATGAAATCC
TACCACTAAACATATTCTCATCACGTAGGGTTATAACAGGTCACCGCCACGGTGATGTTGCTTT
ATGGAAGCACGGCATGCAGGCAAGTTTTAATGCATTCTCTCAGCGTTACTTCCAGTACCCATCA
TCCACATGTATTGATTTATGTTTGGTAAATGGTTGTCTTCAGTGATGTCGAGTCCGGTTTTAAG
AACACAATCGAATGCGAATCATGTATGCGTAAGGATCAAATTTACATACACAACGACGTCATCA
GTGAAAGTACCATCACATAATACTTTAAATAAATCATACAAATATGTTATTACTGACCAAGGTT
ATAGCGGAAGCGAATAATCTTAACGAATAACATTTATAACTACGAAACCTGAAGCTCCATAGTC
ATCTGACTGATGGTTCATCCACCTAATAGCCGTCATACTTTTGGAACTCCATTTATCTTTGATC
TCCTCTATCTCCATCTGAGTAGCGGTTGCATTGGAAGCAACACAGGATGTGTTTTTGCATGCCA
AGTGTGGGCTGAGCTGCTGCGTATCTTGGGCACTCTGGAGGTAGCGCCTCGGCCTAGTGAGCTC
TCCTTTGAAGAATGGTGGAGGCTTAGCAGCACCATGGTGGCTGAACCGATCCGAAAAGGGTTTA
ACTTCTTGGTTATCTTGATATTACATTGAATATCCATCTTCTCAAAATATGATCAATGTCCACC
CTTTCTTTCTTTCTTTCTTCTGATGTATCATTTTGTTCATACATTGAGACGTCTTCAATTTATT
CTCTACCCAAGTTTCATTCTATATTTGCCAATCTTGTTTGCTTTCTCTTTTGCTGCGATATTTT
ATATCCACATATTTATCAAATCTTATTATGGAATATCCTCAATATCTGTGTACAAACTCCCCGT
GTTATCTTGCTAAAAGCAAGTTTTAATTATCATTATTACACATAAGTGATAATGAAGATTAACC
ATAACTACCATTATATTATAAAGGTAGAGCATTAGCAAAAGACTAACATATCTACCTAGGATTT
CATATGAAGGTAGAATATGCAATTCAATAAGTTAATTTAATTCATGGGACGTCTCAAATGCCAC
TTGCCTTGCTTCTCATGCGCTGTAAAGGTAGCGCATGAAGGAGATGAGTAAGAGATGTTTAGGC
TACATGATAGTTTGGTTCTGATATCAATTGTAAGCAACCGGGGACTCTTACTCTCATCGAGAGG
ATGACACTACGAGTTGGGTCAATTTTCGTTTATTTTCTCAAACACTACATATTGCTATACCCTT
TTAAGGGTTGGGATACATACTTATAGCCCTAGAGGTGGGGGTGGCTGCCGGGCATATGGAATAA
GTTGTCCTACTACTAATTGCACTACACAGAGGTGCTATTGTACTCTAGTCAAAAGAAAGACTGC
AGCAAGCTGCTGTCCTCCAAAACTGAAAAGGAGATGCTGCTGTCCCTCATTCAGCAAAAGCTGA
AAAGGAGATGTTGTTGTCCCTGCAGCACGCTGTCCTTGTAGTCAAAATACTGAGATGCTGCTGC
TGCTGTCCCACGCTGTCCTTGCCATGGTTTTTAAAGCGGTAACGGTAAGGCGGTCCAAGGTGTT
GGACCACCGCCTGGACGCCTAGGCAAGGTAGGCGGGCAAGGCGCCTGGGCGTCAGACCACTGCC
CGGACGCCTAGGCATCGCCTAGGCGACGCCTTAAGAACAATGGTCCTTGCAGTCAAAAGACTGA
GATGCTACTGCTGTTGTCCTTCCCACAAACCACGAGATTTATTCCAACACAGGCTACCGCTCCG
TATCTCTCGACCATGGCCACGTCGACTTCGGCTACCTTGGCATCTAGGGGCTATCATCTTCTTG
GTGCACACCGGTCTCTACTCTAGCCGCAACATTCGCACCCTGACGATGCTGTGACTGTAGGGGA
TTTCAACCCGTCAGCTCCTACCTTTGGCTTCTACTCTAGTCTCATCGTGTGCGGTGCTCCTCTG
CGACTGCGGGGGATGTTAGACTATGTGTGGGGGGGGCACCACTGTTAGGCTGCCGACTCATTAG
GGTTAGGGTTCTATGTCTCTCTATATATGTAACCTTCTCTTATGCAATACAGTAAGAGTTCCAT
TCTCCAATAGAAATGATTATATTGCAACAAAAACCAGGGTGTTAACTGGTGACAGCCTAACACT
CATCATACTGCATGTATTTTTTTAGTTTCTCACTATGCCTTAATTTGTTATTATCATGAAGTAA
TGTTTTCTTCTTTTCCTTGAATTAACAAAAATGATATGTTATTCATGCCAGAAAATGATGTCTT
TGATTAACATATCGGGAGAAGCAAGCCTTCCTCGGAATAGCTTGAACACCCAACATGATGTTTA
TTCCGTTAAATTCATTGCAAGGAAGCGGTGGTTTGTAGCCGGGACATGTGATGGTTTCATCCAT
GTGTATAAGTATGAAACAAGAATAATGGACTGCATAAAGAGATTCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.128800627
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR169i-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b