Detail information of Os03g0755000_circ_g.5


General Information
CircRNA Name Os03g0755000_circ_g.5
ID in PlantcircBase osa_circ_021952
Alias NA
Organism Oryza sativa
Position chr3: 31145474-31146929  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0755000
Parent gene annotation Similar to Serine/threonine kinase (Fragment). (Os03t0755000-01)
Parent gene strand +
Alternative splicing Os03g0755000_circ_g.1 Os03g0755000_circ_g.2 Os03g0755000_circ_g.3 Os03g0755000_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0755000-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCAGGATGCAACTGTTCGAATTAATGATGACTTTGGAGAAACTGTTCCTACAAACCCTCAGC
AACAAACAAATCACGAAACATATGATGGTGGGGCAGgtgatctttatgatatctagtgaacccg
caccaatgctcgaggataaggagaagtggtgagtgccatctaatacaccatgaactgttgtgct
tctctgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATCTTTATGATATCTAGTGAACCCGCACCAATGCTCGAGGATAAGGAGAAGTGGTGAGTGC
CATCTAATACACCATGAACTGTTGTGCTTCTCTGAGTACCTCAGTACCAGGAACAGCTGATAAG
AGCATGGTTATAAAACTTTCAGACCAGAGATCATTTCAAGGCTCCTGTTTCTTTTGATCTGTGA
AGAAATTATAACAGTGTCAGCTGTGACCTATTTATCAAGGAATAAACTATACATTTTTTTTGTG
CGTGTTGGTTACTATAGTTAGCAGGTTTCAAAACCGAGGCTGAACCAATTGTCCATCAATATTA
TTATTTCCCTGCACATAACAATTTAGTCATCACGTATTTGACATAAATTATGATTAAACTCCTC
TAGAGCAAACCTTATGAGCCGAACCATTTGGAATGAGCTGGTGGAAAACTACGGTAGAAGCATC
AATATATGGTGTCTTTTTAATTTATACTAATTGAGGTGGCACTTTGTGAAGTTCTTATATGCTA
ATCTCCTGCCTCTATAATCAAGTGCACTGTCTGTCATGAATTAGGAGCCCATCACAGGTACAGT
TTGACACAATTGTACCAAGCAAATATGTTGATGCTGATGTAGTTAACACAAACAAGATGCACTT
CAGTCAACAGTATCAACCATTGACTCCTTTGCCTATGTTCATTCCATTCAATATATTTAGATTC
TCATGCTTTCGTGTGGATAAGGTGGCTATTTTTATGTTTGCCTTCTAAACTATTGTTGTTGTAG
GTTTTCAAACTCTAGTCTTAGATATTTATGTCAAAATCTAACTTGGGCATGAACAAATGACAAG
TGTATTCTAAAAGTAGTCAAACTTTAATTTACCCCCTTTGCTCATCCACTAATTCTTGTTATTA
GCTATTTCTTTGGTCAAGGGCATCAAATGAAACGTTCTTGAGCATTGGTTGGTCTAAGTTCTTG
TTACCCTATCCTTCAGGTCCCTTCTTTTCCATGATTTTATTGCCAAGTGCTTAACAAAAGATCC
AAGACTTCGCCCAGCTGCAAGTGAGATGCTGAAGGTACTTCATACTAGCTTAGGTCAACTTTGT
TATGCATTTTCATGATTATTTGTTCCTACATTTAATTATGTCACTCTCATCCTCTCCCACCAAT
TCTTTATGCAGCACAAGTTTATTGAAAAATGCAACCCTGGAGCTTCGAAAATGTTGGCAAAAAT
CAAGGAAGCAAAGAAGATCAGAGCAAAAGTAGCTGCGGAGACCGAGCTATCTGGCCCTGACAGT
GTATGTTAAACTCGATTAATGATATGTGCATTGATTTTTTGTCAATGTGGTATTCTTCTTTTGA
TGTCTGTAGACAATGCAGGATGCAACTGTTCGAATTAATGATGACTTTGGAGAAACTGTTCCTA
CAAACCCTCAGCAACAAACAAATCACGAAACATATGATGGTGGGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.133228142
Functional Information
Coding potential Y
Potential coding position 31145484-31145490(+)
31146838-31145490(+)
31146467-31146881(-)
Potential amino acid sequence MISSEPAPMLEDKEKWSLLFHDFIAKCLTKDPRLRPAASEMLKHKFIEKCNPGASKMLAKIKEA
KKIRAKVAAETELSGPDSDATVRINDDFGETVPTNPQQQTNHETYDGGAGDLYDI*(+)
MQLFELMMTLEKLFLQTLSNKQITKHMMVGQVIFMISSEPAPMLEDKEKWSLLFHDFIAKCLTK
DPRLRPAASEMLKHKFIEKCNPGASKMLAKIKEAKKIRAKVAAETELSGPDSDATVRINDDFGE
TVPTNPQQQTNHETYDGGAGDLYDI*(+)
MEKKGPLLLILEHWCGFTRYHKDHLPHHHMFRDLFVAEGL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017