Detail information of BGIOSGA014409_circ_g.2


General Information
CircRNA Name BGIOSGA014409_circ_g.2
ID in PlantcircBase osi_circ_014740
Alias Chr04:31197666_31198266(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29262896-29263496  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014409
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA014409-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGCATTTCAAATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAAT
GTTATACTGGTCATCAGGATCATGTGTTTGATTCAAcctgaatgtatgagtatactgttttacc
ctccaagcatgctgaaccaaaatcaatcactttcacggctgcatctgttgtaacactgtaaaaa
ttcaaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAATGTATGAGTATACTGTTTTACCCTCCAAGCATGCTGAACCAAAATCAATCACTTTCAC
GGCTGCATCTGTTGTAACACTGTAAAAATTCAAGGTGCAACTGTCAAGCTACAGCTTGCTTCGT
CCAAATAAACTAAACTTATGCAGAATCCAATGCAATTTACCTCGGAGTTAACAGGATATTTTCA
GGCTTCAGGTCACAGTGAATTATTCTAGCGCCTCTCATCACAACCATGGCATCCAATATCTGAA
AACATAAAACAGAAATATCAGGCAACAAGTATTAATTATATATATAATAAGTAATACAGATAGA
CATCTCACCTGTTTTGAGAAGGCGCGAACAAATTTCATTTTCAGTCCTCTGAAGCTGTTCCTTT
TCAAGAGCTCATACCTAAAATATTGGAGTTTATAATGCAGTTTGAGGGGGTGGGGGAGAAAATA
ATGGATGAACATAGTAGCAAAAGAAATTCTAAAGTTAACTTACAGGTTTTGACCAAGCATTTCA
AATGCTATACACAGGTGATTTTGGAATAGGAGATAGTCAAGCATACGGACAATGTTATACTGGT
CATCAGGATCATGTGTTTGATTCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021