Detail information of AT3G19840_circ_g.3


General Information
CircRNA Name AT3G19840_circ_g.3
ID in PlantcircBase ath_circ_022801
Alias NA
Organism Arabidpsis thaliana
Position chr3: 6891739-6894256  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT3G19840
Parent gene annotation Pre-mRNA-processing protein 40C
Parent gene strand +
Alternative splicing AT3G19840_circ_g.1 AT3G19840_circ_g.2 AT3G19840_circ_g.4 AT3G19840_circ_g.5 AT3G19840_circ_g.6 AT3G19840_circ_g.7 AT3G19840_circ_g.8 AT3G19840_circ_g.9 AT3G19840_circ_g.10 AT3G19840_circ_g.11 AT3G19840_circ_g.12
Support reads 5
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G19840.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTTGATCCTTGCAGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAAATGGGAGAAG
GAATTGCCAAAAATTATCTTTGACCCTCGCTTTAAGattgctagtacaggttttgtctctcagt
cagttccatattctgttactgcacaatggggtactaatgcagcagcctcctcaaatgttaatcc
catacctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGCTAGTACAGGTTTTGTCTCTCAGTCAGTTCCATATTCTGTTACTGCACAATGGGGTACTA
ATGCAGCAGCCTCCTCAAATGTTAATCCCATACCTCAAGCTTCGCCCATGCTAGCAAATGCACC
TTTTGGTCGACCAGGAACACTCGCCCCTCCTGGACTAATGACATCTCCGCCTGCTTTTCCTGGT
TCCAACCCTTTTTCTACAACGCCAAGACCTGGGATGTCTGCAGGTCCTGCTCAAATGAATCCTG
GTATTCATCCGCACATGTATCCTCCATATCATTCACTGCCTGGAACGCCTCAAGGAATGTGGTT
GCAGCCTCCTTCTATGGGTGGTATTCCCAGGGCACCTTTTCTTTCACATCCTACTACCTTTCCT
GGTTCATATCCATTTCCAGTTCGTGGAATCTCCCCTAACCTACCATATTCTGGTTCTCATCCGC
TTGGTGCCAGTCCTATGGGAAGTGTTGGCAATGTTCATGCATTACCAGGTCGTCAGCCTGATAT
ATCTCCCGGGCGAAAGACAGAAGAACTCTCAGGAATCGGTACGCTCGAGGTTTCATGATAGATT
ACTGATCCATGTAAGAGCTGTTTGACCTTAATGGTTATTCTATTGAGTTTACATATTTTTTTAT
CAGGATCATCTTGTATTTTGCAGATGACAGAGCTGGTTCTCAACTAGTAGGAAATCGGTTAGAT
GCCTGGACTGCACATAAATCAGAAGCAGGAGTTCTTTACTACTATAATTCCGTTACAGGGCAAT
CGACCTACGAAAAGCCTCCTGGTTTTGGAGGGGAGGTGAGTATTGCTGATTACATGGCTTGTTC
ATTAGTTGAGACTACGTCTATTCCATACGCATTTGGTATCACGTCTACCTATTTTGCTTCACGA
CATGTCATTTATGAGTTCGTGTCTATAATACGTATTTGCATTTCTAGTATATCCGAATTGATGT
TTTACAATGTCAGAATTTGATCCAGATTTTTGTAAAGTCCTAGATGTCATATATTCATTAGCTG
ATGAAGTTCTCTATTTTCCGGGCCTTATATTGGGATTGTGATCCTTTGTTGGTATCAATAGGTA
TGAAGTTGCTTAAGATTGTCGAGTTACTATATTATTGCAGTGAACTTGTTGTAAGAGCATGTGA
ATTATTACACAAATCACCTTAAGTTTATTCACAGACTGTAAATATAAATTGCCTTGATGCTGTG
CAAAAACTTATGAATGATATTTGTTCTAGTATACCTTGATAATGGATGCACAGTTTCTTCATGT
TGCCCTAGTCCTTTAGACTTTTTAAGCAATTTATAATCTATACTTTTTTCTTAACTTTTGCAGC
CTGATAAAGTGCCAGTGCAGCCAATTCCTGTTTCAATGTGAGTTCTTAGATCCATACTTGCTCT
GACAAGATTAGTTGTCATATTTTCAATGATATTAGCATGGTGACATTATATTGTTAAATTTCTC
GTGTATTATTTTTTGTACTAGGTCGCCAACAATTTCATTCCCATGAAATCAACATATTTATATT
TTGTTGAATTACTTTGAGCCTGCTAAAATACTTTGTACATGTTAGAGATATCTCATCTAAATGT
TACCAAATGTAGGGAGAGTTTACCTGGGACGGATTGGGCTCTTGTGTCCACAAACGACGGCAAA
AAGTATTACTATAACAATAAAACAAAGGTCAGCAGCTGGCAGATTCCTGCAGAAGTAAAAGATT
TCGGGAAGAAACTAGAGGAGAGGGCTATGGAGAGTGTAGCATCAGTGCCTAGTGCTGATTTAAC
TGAAAAGGGTTCTGATCTAACAAGTTTGAGCGCACCTGCTATTAGCAATGGTGGCCGGGATGCT
GCATCTCTAAAAACTACAAATTTTGGTTCGTCCGCGCTGGATTTGGTTAAAAAGAAACTACATG
ATTCTGGAATGCCTGTCTCATCTACGATAACATCTGAAGCAAATAGTGGTAAAACAACTGAGGT
CACACCCAGTGGAGAAAGTGGAAATAGTACGGGTAAGGTGAAAGATGCTCCTGGAGCTGGGGCC
CTTTCCGATTCTTCTTCAGATTCGGAAGATGAAGATAGTGGACCATCGAAGGAAGAGTGTTCTA
AACAGTTTAAGGTGTTTTGAATATTTCTTGTGGTTTTTGTCTTTTTTGACATAGGGTTTAGTTT
AGATTTCTTTTCTCATGTTTTTCTTCTTGCAAGTTAAATTAGCCATTTAGACACATCTTATTTA
AAGCATTCTAGAGAAAAGTTTAGATCATGCATTGAAATTTTCCTCTGTAGAGGGGTCTTGTTCA
TATATCGGAATGCCATGATTCCTTGATACATGCCAACTTCTAGTGGACATTTTTAAGTTTGGAA
ACCTTGAAATTATTCAGATTGAAGATAATTTTCTAATATCCTGTTTTTTTTACTTGATCCTTGC
AGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAAATGGGAGAAGGAATTGCCAAAAAT
TATCTTTGACCCTCGCTTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.103564589
Functional Information
Coding potential Y
Potential coding position 6891850-6894253(+)
Potential amino acid sequence MLANAPFGRPGTLAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGT
PQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGISPNLPYSGSHPLGASPMGSVGNVHALP
GRQPDISPGRKTEELSGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGG
EPDKVPVQPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMES
VASVPSADLTEKGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLHDSGMPVSSTITS
EANSGKTTEVTPSGESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGI
APFSKWEKELPKIIFDPRFKIASTGFVSQSVPYSVTAQWGTNAAASSNVNPIPQASPMLANAPF
GRPGTLAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGTPQGMWLQ
PPSMGGIPRAPFLSHPTTFPGSYPFPVRGISPNLPYSGSHPLGASPMGSVGNVHALPGRQPDIS
PGRKTEELSGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPV
QPIPVSMESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSA
DLTEKGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGKT
TEVTPSGESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWE
KELPKIIFDPRFKIASTGFVSQSVPYSVTAQWGTNAAASSNVNPIPQASPMLANAPFGRPGTLA
PPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGTPQGMWLQPPSMGGI
PRAPFLSHPTTFPGSYPFPVRGISPNLPYSGSHPLGASPMGSVGNVHALPGRQPDISPGRKTEE
LSGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSM
ESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLTEKGS
DLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEVTPSG
ESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKII
FDPRFKIASTGFVSQSVPYSVTAQWGTNAAASSNVNPIPQASPMLANAPFGRPGTLAPPGLMTS
PPAFPGSNPFSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGTPQGMWLQPPSMGGIPRAPFLS
HPTTFPGSYPFPVRGISPNLPYSGSHPLGASPMGSVGNVHALPGRQPDISPGRKTEELSGIDDR
AGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTD
WALVSTNDGKKYYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLTEKGSDLTSLSA
PAISNGGRDAASLKTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGKTTEVTPSGESGNSTG
KVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFK(
+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017