Detail information of BGIOSGA006922_circ_g.10


General Information
CircRNA Name BGIOSGA006922_circ_g.10
ID in PlantcircBase osi_circ_012662
Alias Chr02:5795490_5800453(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 6615690-6620654  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA006922
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006922_circ_g.11 BGIOSGA006922_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA006922-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAATATGGTGGTACATTTTCATAGCTGAGGAGCTTAAACAAAGGCTCAATATCAGGGAACCA
TTTCCTTCTTTCAGTAGTATTCCCATTTTCAACAACccttgtttccgttcattgctaaattgct
actgccaggagattgtaacaggtttgcactccttaagttctcagcacaatggccaaaagtatga
catagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTTTCCGTTCATTGCTAAATTGCTACTGCCAGGAGATTGTAACAGGTTTGCACTCCTTAA
GTTCTCAGCACAATGGCCAAAAGTATGACATAGAATAGCCAAACAGGACTCCCGGTATAAGGAC
GATGATATATCAGATACATGCAATGCCAATGCTAGCATCTTTAGCAACCATGCCCTCTGAAATT
AACAAGTTGTAGATTAACAGGACGAAAAATGGGTGGCATCAAGAAGTTTGTGCCTACAAATCAT
ACCTCATGGAGCATGCTAATACGAAGAGATTGATTGTTGTTCCTTCTCGGAAGTGGTGACACAC
CAATGGTTCCAACATGCTGGGAACAGTAAGCAAGAAAAGAATTATGACTTCCAATTCAACATTT
AGCTATTTTAATTTAAAAGAACAAAACAAGAATGTGTACCTTAGAAAAGAACTGGTATTTTGTT
GTGCTCAGGAGATCCATGACAGGCCCACAAGTTAAAGGGTCAAGGCATAACTCGTAGAGAAGCT
GAATTAAAATGAGTCAAACGTACATTTTGACACTAAAGGATTCAAATAAGGAGGTGGGTTCTAT
CCCTGAGAAAACAAACCTGAAAACCGAATTCATGCAGTAAAGCATTTATATCTGGCTTTGTCAC
CTTTTCAAGATTGTCAAGAATTGTCTTTAAACAACTGTGGCACAATATGATAATTCGTCAAACA
AACCTTATGGCTATACAAAAAACAAAGAGCCTCGAGCTAACCTGTAGTGTGACTTTGGTTTTAA
AACTGTCCGTTCTATGGATCCATTGACATCGAATCTTAGGAGTAGATGTGTAATGTTGGGAGCT
GGACGACAAATATTGTCGATAAGTAGCTGCATGACAAAATGGTTATTACAGTTAGAAGATAGGC
ATATTAAGTACACTACATAAAAGAAACACTAAAGCTGAAATAACGACCTGTAGTATTAGGACAC
CAACGTCATCTTTTGTGTTCTCTATGACCTGGAAATCATCAAAGCGGAACTCCAAGCAAGCAGC
ATAATCCTCAATTACCGATTTAGCAACATCTGCTTTCAGAAGCAACTGAACAAGACCAACTATT
CTAGAACTGCATAAAACAAAATGGTGAAAAGATTGGCACATTAATCTTAATTACTCTGATTGCA
GGCGTAAACATGGAAAAAGGTAGACTTCACTAAATAGTAATCTGGAACATAAATTTGGATATAC
CTCAGAATTCCCATAATTTTTATAGAGCACTGTTGAATCTGAGGAAGATAATCATATCGTACAA
ACTCCAGTAAAGCTATAATATGTCTATGATTCTGAGCTAACACAACATCCAACGGCTGAATAGT
GCAAAGAGTAACAGACACACCATTAGATAGAGAGAGGCATGACGAGCAAAAGAAAGATATTGAC
ATAAAGAAAGAAAACCTGGTAGAGTGGACGGAAAACATCAGCAAGCACCAGATCTCTCTCCATC
ACAAGAATAAATATTTCAAATGATAGATGGACAGTTTTCTCCAGAAGAATCCCATAAGTTTGGG
TAGTTCGCTCATTAATAAGAGTGTCCACACCCACTGATACGATGTTCATAATATTCCGGAAAGC
AACTTTCCCACTCATGAAATCCTGCATTGGAATTTTACAACCAAATATTTATACAGAACACATA
GACACATATAAAAGTTCAAACAAAATATGCATATCATTAAACATTATTAGAAACATCAGAATAT
TAGATGTATCAGTGAGATTGATATACCCCATAAAGCAAGAGCAACCAAGAAATCACATAAGCTT
CATATAAACTGAATTGATTGTCACGTGTTATCTGAATCTTACAGGATTATGCTTTATTACAGGA
ATTGCAGACAAAATCACATGTGGGAGGGATAGAGTGCAGGACTTCTAAAAAGAGAAAGTAAAGA
GCTATAAGCTCATGTTTATTTTCCTGTGAAATAGAGGAATAAGAAACCAACCCATATTGGTTTT
TCCCGATTCTATTCCTTTCTTCCAAAGGCTGCATAAACTTTTCCCAAGAAATGAAATCTTCCAA
ACAACTCTATGAAATTCCTTCAAATCAAAGGAGCCTTAGGGCCTCTTTGTTTAGGCTTAGGCTC
ATTGGCTTAGACTTTTAAGTTAGCTTTTTGGCTTATATGATTTACAAGCCAATGGATTTGAAAT
CCTAAGTTTAGTGGTGTAGTTATACCTCTATCTCACATAAGCTAAAAAAGCTTCTCCAACCTAG
CTTTTGGCTTAATAGTGTAAGAGTGGCTTATGGCTTTAAAAAAGCCGTTTGTTTGTTTAGGCTT
AGACTTTTCGGCTCAAAAGCTGGTTTATAAGCCTAAACAAAGAGGACCTTAATCTGTTGAGAAC
ATGAGCTGAGCAATGCAGAATCAACAGGTAGTAAATTCCTGTCAATTGTTGTTTTTTCAAACTG
ACAACATTGTTATAAAGGTGGAATACGTGGAAACAAAGCTCATAGGCCACCAATTGACAACTGC
GCTCGATGTCCATTTTCCAGCCATAATCCAATGTATAGTAGTACTGTTTCTATTAGGATGCTCA
ACCTTTCTAGTTATGTAAAGTACACACTAGGTGCGCAGTATGATGTACTAAAGGTGTCCTGGGC
CAAATCAAAATGTACTGGATAAACACACAGGACAATGAGTGCAATAAAAAAGAGAAGTATACCA
TGCCATCAAGTTTGCCAGGTTCCTGCCCCCAAAATTAAATAGAAAATAAATAAAGTTTGCTCCA
TGTCTGCAATACGACATCAACTCCACCTCTCTTCCTTCTATAATAATAAGCCATTGCCATCAAT
TTTGGCACCATTTATGCAACTCAATGACAATATACACCTTGCCAGGCCTATGAGCGCTCATCGG
CAATGAGCTTATCCCCAATAGCTAGAATACTCTGATCAAGCTAAATCTAACTGTGTTTCAATGT
TTCTTGATTACAATTGGGCACATGGGTCCATTTAGAGGAAGAGTTCCCCTGCCAGTATGAGGGT
ACTGCTAATGCACAATATCATTAACATAACACCCTAGTCACTTCCTCTATTTCATTTCCCCAAC
CCCTCCCTTGCTCACTTGCCAGTATGCTGTGTGTGACTAGACCTCCATGAGGCCATTTTTGGCC
ATTTGGAAAAGCTAAGGTAGCTAGCAGCAACAGAACAAACTCAGGAACAAAATATTTTTATTGC
AAGAAAATTATAGTAAGCTTGCCAATATTCACATTCAGCTTGCTTAAGATGTTAAAGCCACATG
AGATCAACAATTGAACATACTTTGAGTAGCTCAAGCACAGGGAGCTGTCTGTCGATTGAGGCAT
GAGATGTTGTTGAAGGTCCAGATGCGTTAACAGCAGCATAAATATCATCATCCTTGATGTCATA
CATGCTTAAAACCCTGCACATTATCAATTGGCAATTTTTTTAGAGCACCGTTGCATTGTATAAC
ACATATGCATAAGTACTGAAGATGGCTTGTTCTCTTTGAGGAAGACATCAAACTAATGGGATGA
AAACTCTGAACACTTTGTGTACAACTTGATGTGCATTTCTTTGAATATATTATATCAATAGGGT
TCCCAACTATTTGTCATCCAAAAAATGACAAGGTAAAAGAAAAAAAAATGCAAGTAATGGAACA
TATGCCAATCATTATGCTTACATGCGGAAGTGCTCCAAGCAAGCAACTGCCAGTTCCCACTTCT
CCCGAGGATCGGCATAGGCTCTTTGAGGGAAAGGCCCAAATACATCTTCGTAAACAAACTTAAA
TATACCCATAAACCTGTTAACAAAAGAATCTGGATCTTTAAAATGTTTCAAGAGCTAGCAAAAA
TATAGAATAGTTAGTACCTCCGGCCCTTGTCACTTATGTTTCTTTCTTCTGCAATTAGAGCATT
GACTAAGTTGAGAAATGATATTGTGGATGGATAACTCTCCCTCATTGCTTCAACTTCATTCAAC
TCAAACCTCATGTCATAGATCTGCCAAACACATTCTTCCATCAGCAATTTAGTTTACAGCATTA
ATCAACCTGCCAAAGTGCCTTCTTTTTCCAAGAACAGCAATGCCTCCTAATTTAAACAGAGTTG
TAAGGGATAGACTAATCCCACCTGAGGGTAAGGTAATAACTACTAAACAACTTATCTGATGAGT
AATGCAGCCAATGCAAAAGTATCTGAAAGGCATGTGCTCAAAAAGCACAAGATAGGTTGTGTGT
GGCAGACAATTTCTGTTAGAACACAATATCCATTTTTAATTTATTTCTCAAAAAACATCTGCCA
AAACACTAAAATTTAGAAAGCTGTTCTAGGCTTCTCGCAAAAAAGAATACCAAATTCCACACCA
ACTATAGTAAACTCTATAAAATTTAACACATTCAGTAGTTTGATATCTGGCATCAGTCACAGCA
CATAGATTAAGGTCCTCAAATGGCAGAGAAACAAAACAAGGACATGTGTAACTAACAAGATTTA
TATCCATTTTATATATGTGTTAGTTACAAAAGCATCAAAAAGATCCAATAGTTAAATATCAGAG
AAATATTCACTTGGAAATAGGTCTGAAAATTTGTCCCCATAATACTTGATATCATTCAGAGTTC
AGACAAGTTCAAAAGATAAAAGTGTAGCAACACAGCAAACTTGATACCTGTGTTGCATTATGCT
GACCAAGTGGAGGCGTAACCACCGGAAGATCATATTGTTCAAGATAACTCCAAATAGCATCCTT
CAACAGCGGTGATACTTTGATAAATGCAGTGATCGAATTCCTCAAAGCCCCCTGTTCATGAATT
TTAGTATACATGAATTTAAAAGCAAAACCACAAAATGATATCAAAAGTAAAAAAAAAATGTACC
TTCAAATATGGTGGTACATTTTCATAGCTGAGGAGCTTAAACAAAGGCTCAATATCAGGGAACC
ATTTCCTTCTTTCAGTAGTATTCCCATTTTCAACAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021