Detail information of BGIOSGA023552_circ_g.2


General Information
CircRNA Name BGIOSGA023552_circ_g.2
ID in PlantcircBase osi_circ_016595
Alias Chr06:29982800_29983331(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 31282141-31282672  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA023552
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA023552_circ_g.1 BGIOSGA023552_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA023552-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATACAGCAGCAATTGCTGCTGGAAATAATGGGATTCCAGTACGAATGCATGGTCATGAATTT
GGCAAAGCAAGTGGTATGGCTCCACGTGCTAGGTAAgagctggtgaagatgttgtgattggctt
tgtggattcaggaatttacccccaacatccaagcttctctgcccacaaaactgatccttttggg
cctgttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCTGGTGAAGATGTTGTGATTGGCTTTGTGGATTCAGGAATTTACCCCCAACATCCAAGCTT
CTCTGCCCACAAAACTGATCCTTTTGGGCCTGTTCCTCATTACAAGGGGAAATGTGAGATGGAT
CCAGTAACAAGAAGAAGCTTTTGTAATGGGAAGATAGTTGGTGCCCAGCATTTTGCAAAAGCTG
CAATTGCTGCTGGAGCGTTTAATCCTGATGTCGATTTTGCATCTCCATTAGATGGCGATGGCCA
TGGAAGGTCATGCTCCTAATTAATATATGTTCTGTTCTAGTTTCTTATACCAAGAAAAATGCCA
TACATGAAAATTGTTCTGTCCAAAGAATTAGCTATTCTGGTTGTGTTTCATCTTGAGAAGAATG
GTATGACTTATCTAGTTATCTGATACAAAGATGCTTTCCCTTAAACAGTCATACAGCAGCAATT
GCTGCTGGAAATAATGGGATTCCAGTACGAATGCATGGTCATGAATTTGGCAAAGCAAGTGGTA
TGGCTCCACGTGCTAGGTAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021