Plant Circular RNA Database

Detail information of Os05g0141100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0141100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_026515
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2368180-2371032  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ie-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Os05g0141200						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os05t0141200-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						3
					
						Tissues
						seed
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0141100-01:3
Os05t0141100-01:3

General Information
CircRNA Name	Os05g0141100_circ_g.2
ID in PlantcircBase	osa_circ_026515
Alias	NA
Organism	Oryza sativa
Position	chr5: 2368180-2371032 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ie-circRNA
Identification method	CIRI
Parent gene	Os05g0141200
Parent gene annotation	Hypothetical conserved gene. (Os05t0141200-00)
Parent gene strand	-
Alternative splicing	NA
Support reads	3
Tissues	seed
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0141100-01:3 Os05t0141100-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTTCTGATATTTTTTTTCCACTAGGCGCATGCAATGTCAAATGATGGGCTTGGGCCGCCTTTT
CTATTGGATCAATGCTGTGTGGTCTATGCAATTCAGaacttttaaggcggcattatctgtttgt
aggtctgaacttgcaattcccgaggttttgttagaatttggtaagaatctagaaggctagaaat
ccatctct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AACTTTTAAGGCGGCATTATCTGTTTGTAGGTCTGAACTTGCAATTCCCGAGGTTTTGTTAGAA
TTTGGTAAGAATCTAGAAGGCTAGAAATCCATCTCTTAATTTGCTTTGTCCTGTGAACATGGCT
TTCTTTGTTATTGGCTGTACATATTTACATTTTTCATACTGAACTATCTGACTCAGTCAGTACT
ACTCTATGACATGTATGCCCTTTTATTCAAATGTGCTCCAAAAGACATATTGTTTCATCAAATA
ATCAACATTATGTTTGTTGATCTTTGATTTTGTTTTTACTATGTGACATAATGACCAATGGAGT
TCACCCATAAAGCATATAGGTGGTTATCTTTTGGTTTTGTTCATGTCATATTTATGTATTTAGT
TTGTTCCTATTTATATTTTTTTAGATAATGGATTAAAAAACCTGGCCTCAACATCCGTGAAAAG
GATGTACACATCCAATTTTCCTATTTAGATGAAGCTTACTTTTTTCTCGGATATGCATTTTTTC
CAATATATGTTTGTCTAGTGGTGTTTAGTTGTGCTATCAGTGAGGTTGTGAGTGGTATATAATT
GAGAGTTGGCACTTGTGTACTCTGCTAGTTCTGTTCTGTCTGAATACATGTGTGATTGACAGCA
TGGTCTTTTTGTAACATATGTGAATACTGCAGTGTTTTATTTAAGTTCAATTATAGTACTTAGT
TCGGATGACTTCTCTGAGGTTAATTTCACTGATAACAATTTCATTTTACCTCCATTTACTAATA
GCAATGTAAATTTTAAAAGTTCTCTTTTACGAAGCATTCAGTACCATGCCTAGATGTTCAAGTC
TCTGAATAGGCACATTATATATCCATTTGTTTGCTTAGAAATTTCAGATTTTCTAAATTTTGTT
TCAAGGAGCTGGCATTCTCTGTTTCTAGACTTGAATTTACTGAGTAATATTTTCAGCTTTTGAG
CTAACGATACCTACAAGTGAATGGGGGCCTCTACAAGTTAACAAGTCGATTGGAATGTGCTGTT
TTTTTGCTGTCATGTTTATGTATCTAGAGCTTCTTTTTTCAAAAGAACTTTTCAGATTTTCTCT
GAACATGATGATGATTTGTGTTTGTACTAATGACTAGCTAATTTTCTTAGAGTTGATGATCACA
TTTGCACTTTTTTTTTGTGGTTATTTGTTGTCTCTCACACGGTGATTTAGTTTTTTAGTTGTAT
ATGTTCTGTGGAGGAAATAATATTGGTAATGTGGTGCTGAGTCTGGAAAGCCTTAGACTACCTG
CAGTTGCCATTCGCATCGAAGAAAGGCATCGATCCTGGGTTGTTTTTTTATGGATGCCATCACC
CTTTACTTTTATGCTATGTTTCTGTGTCTTGTGCGTAGTTGTGAATTCTAAGTTTCCATTCCAA
TGCTTGACAGGAGTGATTTGGCAAACTAATTGTGAAACTGAGCAGCAAAGCACTGCATGTCATT
GTGATCACTGTGTTCATGGATTTTATCACCATCACAGGGTAACTATCAAAACTATGGCAATCAA
GAGTTTGTTTCCTATGATGTGCTGATTTTAAGAGTAAATTACTCTTAAAATCAGTGATGGTGAC
AGGGTAATTTACTCTTAAAATCAGCCCATCATAGATTGTGCGATGCATCGTGTTGCATGATCAA
TGATTTTTTTTTCATAATCATTGAAGCTCCATTCTTTTTGGTTAGATATTTCATTTCATACAGA
AGCTTGTAAGCCTAGAAATGATTTTTGAGATAATGAACGGAAACGATTTGGTATCGTGAAATAC
CAGTACCTCACCGGAGCAAATCACATGATTTTTAGTCAGAATTTTGGAAAAAAAAAAGAAAAGG
AGATTTGGAGGGAGAGACGTCCCTCCAAACTTTTTTTAAGAAGAAATTATGTGTGATGGGGATT
GAACACGGGACCTTAGAGTTGAAAACCACATACCTTTTGCCACTGTACTATTAGGTGCATCTCG
TCAGAACTTTTGTAACATCCAGAACTTTTGTAAGACTAGATGTTTTTAGTGTATGAGTGGTGAA
CTAGTACAATCTCTGAATTTAATCGCTAACATTTTTTGTAATGTTAGTCCTATGTGTTTCTCTA
GTTACAGCATTAGTATGCCCTGTTTACTGATGGAACTTGCAGAAAAGTTCAGACATACTACTAC
AATTGAATATTTCCTTGAATCAGCATGGCACAGATTCATCAGAGCTTATATAACTCTAGGTTTC
TTTTTAGTTCAGAAATCTAGTGTGGCTGTGTACTTTTGGTTTGGACATTTTTTTTTTGTCACTG
TACAAGCTGCTAATTCAGTTTGGATTATCTGTGTAACGACCTTTTTTTAGTTATGCTTTGTATT
TTGGTGGTCAGCGTCCTAATGAAGTCACCTTGTTTTGGTTCTAGGCCTTAAATGAACAAGCGTC
ATATTGCAGACTCTTCTATGCAACGGCACATACACATCAGCTTGCCACTACATCCAGAGGTTTC
TGAATTGCGGCTAATTTGATGATTTGATTGGTGCTAGAATTCATTCAAGTTATGATCTTGAGCA
ATGTTCTGCCGCAAATACTTCAAAAATGTTCTTGTAGATATGCCTGGGCTCACATTCTTCACGG
ACATACGCAATTTCGCTTCTATTCTGGGCCGAGATTTATTGTCAGGTGCTAGCCTGGCTTGTGC
TTTCACTGCTTTGTAGTTTCTTGTGACATTTCATTGACCAGTGCCTTTTTTTTTCGCACCTGCT
AATTTCTGATATTTTTTTTCCACTAGGCGCATGCAATGTCAAATGATGGGCTTGGGCCGCCTTT
TCTATTGGATCAATGCTGTGTGGTCTATGCAATTCAG
						
					

			
		

Sequences
Splice junction sequence	ATTTCTGATATTTTTTTTCCACTAGGCGCATGCAATGTCAAATGATGGGCTTGGGCCGCCTTTT CTATTGGATCAATGCTGTGTGGTCTATGCAATTCAGaacttttaaggcggcattatctgtttgt aggtctgaacttgcaattcccgaggttttgttagaatttggtaagaatctagaaggctagaaat ccatctct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AACTTTTAAGGCGGCATTATCTGTTTGTAGGTCTGAACTTGCAATTCCCGAGGTTTTGTTAGAA TTTGGTAAGAATCTAGAAGGCTAGAAATCCATCTCTTAATTTGCTTTGTCCTGTGAACATGGCT TTCTTTGTTATTGGCTGTACATATTTACATTTTTCATACTGAACTATCTGACTCAGTCAGTACT ACTCTATGACATGTATGCCCTTTTATTCAAATGTGCTCCAAAAGACATATTGTTTCATCAAATA ATCAACATTATGTTTGTTGATCTTTGATTTTGTTTTTACTATGTGACATAATGACCAATGGAGT TCACCCATAAAGCATATAGGTGGTTATCTTTTGGTTTTGTTCATGTCATATTTATGTATTTAGT TTGTTCCTATTTATATTTTTTTAGATAATGGATTAAAAAACCTGGCCTCAACATCCGTGAAAAG GATGTACACATCCAATTTTCCTATTTAGATGAAGCTTACTTTTTTCTCGGATATGCATTTTTTC CAATATATGTTTGTCTAGTGGTGTTTAGTTGTGCTATCAGTGAGGTTGTGAGTGGTATATAATT GAGAGTTGGCACTTGTGTACTCTGCTAGTTCTGTTCTGTCTGAATACATGTGTGATTGACAGCA TGGTCTTTTTGTAACATATGTGAATACTGCAGTGTTTTATTTAAGTTCAATTATAGTACTTAGT TCGGATGACTTCTCTGAGGTTAATTTCACTGATAACAATTTCATTTTACCTCCATTTACTAATA GCAATGTAAATTTTAAAAGTTCTCTTTTACGAAGCATTCAGTACCATGCCTAGATGTTCAAGTC TCTGAATAGGCACATTATATATCCATTTGTTTGCTTAGAAATTTCAGATTTTCTAAATTTTGTT TCAAGGAGCTGGCATTCTCTGTTTCTAGACTTGAATTTACTGAGTAATATTTTCAGCTTTTGAG CTAACGATACCTACAAGTGAATGGGGGCCTCTACAAGTTAACAAGTCGATTGGAATGTGCTGTT TTTTTGCTGTCATGTTTATGTATCTAGAGCTTCTTTTTTCAAAAGAACTTTTCAGATTTTCTCT GAACATGATGATGATTTGTGTTTGTACTAATGACTAGCTAATTTTCTTAGAGTTGATGATCACA TTTGCACTTTTTTTTTGTGGTTATTTGTTGTCTCTCACACGGTGATTTAGTTTTTTAGTTGTAT ATGTTCTGTGGAGGAAATAATATTGGTAATGTGGTGCTGAGTCTGGAAAGCCTTAGACTACCTG CAGTTGCCATTCGCATCGAAGAAAGGCATCGATCCTGGGTTGTTTTTTTATGGATGCCATCACC CTTTACTTTTATGCTATGTTTCTGTGTCTTGTGCGTAGTTGTGAATTCTAAGTTTCCATTCCAA TGCTTGACAGGAGTGATTTGGCAAACTAATTGTGAAACTGAGCAGCAAAGCACTGCATGTCATT GTGATCACTGTGTTCATGGATTTTATCACCATCACAGGGTAACTATCAAAACTATGGCAATCAA GAGTTTGTTTCCTATGATGTGCTGATTTTAAGAGTAAATTACTCTTAAAATCAGTGATGGTGAC AGGGTAATTTACTCTTAAAATCAGCCCATCATAGATTGTGCGATGCATCGTGTTGCATGATCAA TGATTTTTTTTTCATAATCATTGAAGCTCCATTCTTTTTGGTTAGATATTTCATTTCATACAGA AGCTTGTAAGCCTAGAAATGATTTTTGAGATAATGAACGGAAACGATTTGGTATCGTGAAATAC CAGTACCTCACCGGAGCAAATCACATGATTTTTAGTCAGAATTTTGGAAAAAAAAAAGAAAAGG AGATTTGGAGGGAGAGACGTCCCTCCAAACTTTTTTTAAGAAGAAATTATGTGTGATGGGGATT GAACACGGGACCTTAGAGTTGAAAACCACATACCTTTTGCCACTGTACTATTAGGTGCATCTCG TCAGAACTTTTGTAACATCCAGAACTTTTGTAAGACTAGATGTTTTTAGTGTATGAGTGGTGAA CTAGTACAATCTCTGAATTTAATCGCTAACATTTTTTGTAATGTTAGTCCTATGTGTTTCTCTA GTTACAGCATTAGTATGCCCTGTTTACTGATGGAACTTGCAGAAAAGTTCAGACATACTACTAC AATTGAATATTTCCTTGAATCAGCATGGCACAGATTCATCAGAGCTTATATAACTCTAGGTTTC TTTTTAGTTCAGAAATCTAGTGTGGCTGTGTACTTTTGGTTTGGACATTTTTTTTTTGTCACTG TACAAGCTGCTAATTCAGTTTGGATTATCTGTGTAACGACCTTTTTTTAGTTATGCTTTGTATT TTGGTGGTCAGCGTCCTAATGAAGTCACCTTGTTTTGGTTCTAGGCCTTAAATGAACAAGCGTC ATATTGCAGACTCTTCTATGCAACGGCACATACACATCAGCTTGCCACTACATCCAGAGGTTTC TGAATTGCGGCTAATTTGATGATTTGATTGGTGCTAGAATTCATTCAAGTTATGATCTTGAGCA ATGTTCTGCCGCAAATACTTCAAAAATGTTCTTGTAGATATGCCTGGGCTCACATTCTTCACGG ACATACGCAATTTCGCTTCTATTCTGGGCCGAGATTTATTGTCAGGTGCTAGCCTGGCTTGTGC TTTCACTGCTTTGTAGTTTCTTGTGACATTTCATTGACCAGTGCCTTTTTTTTTCGCACCTGCT AATTTCTGATATTTTTTTTCCACTAGGCGCATGCAATGTCAAATGATGGGCTTGGGCCGCCTTT TCTATTGGATCAATGCTGTGTGGTCTATGCAATTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015623 						
					
						PMCS
						0.199971997

Conservation Information
Conserved circRNAs	osi_circ_015623
PMCS	0.199971997

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR415 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR415
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0141100_circ_g.2

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