Detail information of Solyc01g100590.2_circ_g.1


General Information
CircRNA Name Solyc01g100590.2_circ_g.1
ID in PlantcircBase sly_circ_000393
Alias NA
Organism Solanum lycopersicum
Position chr1: 90569408-90574063  JBrowse»
Reference genome SL2.50.38
Type   ui-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc01g100590.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   TT-CA
Number of exons covered Solyc01g100590.2.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCCTCAAAAACCACAACTAGGGAATAGTGCACATCCTTGCCATCAAAACCTTACATGTCAAG
ATTGAATAACCCTCAAAATCACGATTTTTCACAAATagattaaagatcaatgggttgaaaagag
atggcatttttcttatgaacccaataagcaacaaaaaaggatacgccaaatgaaacaacagata
acagaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTAAAGATCAATGGGTTGAAAAGAGATGGCATTTTTCTTATGAACCCAATAAGCAACAAAA
AAGGATACGCCAAATGAAACAACAGATAACAGAAAAGCAAAACCATTGGCAGCGTCCCAAGAGC
TTCTTGATACCACTTTGATGCCTGCAGATGAACCAGGAGGAACATCTAGAGGTACCCAGTCACA
ACCAATCGTGTAATGTCCTGATCCGTGCCATGGATTTCCATCCTCCGGATACCAAAATGCAGCT
GAAAACTTGCTTGACTGACCGACAGTGAATTGCACATCCTACAGCTCGACAGCAAACTTAATTA
GTGCAGCCCTTTTAAACACATACTATTTTCTTTTCAGCTGCTAATAAAGGGGGGAAAGCATGAA
ACAGCATGCCAATGGATGTTTTAACAAGTGACTATTGACAATGTGGAATTGAATTTTTTGTCCT
TTTCTGTCTCATTGACGATGTTTACATACACCTAGGACTTTTTTGGTGTTTATATTTAATGCTG
AGGTTTCTAATGTATGACAACATTATCGATAACATAAGCCTCAAAGAGACTAAACACATCAGGA
TGATAGACTACCTGCTGAAGACGATCCATGGTTCTCAGAGCCCTAGAAAATTCAAAATAGAATG
TTCCCTTCTGACCCTTTGTTGAATAAGGACTGTCTTCCTCAGAATAACCTGTCAACACAAGTTC
ATTTAAGAAATGAAGATGCCAGAAGAAGAATCAACTTTATAGTATCATCAAGAAGGAGCACAGA
TGAAACCCATGCTGATTTGACAAGGGTGAAAGATGTTACCTGAATGGGTACTGAAACTGCTATG
CCACCATGCACCCCTCCAGTCATTCTGGGCAGATGTATCATTTCCTAAGAACAAAAATTAAGGG
TAAGTACAAACAGACTCGAGCCAAAACTCGCATGTCAAGAATGTTGTGTCCTGCTTATAGATAT
AGCAGAAACAAGATCGCCAAAATCACAAGAATGAAGGCATGCATATCATAGTTGAAGAAGACAT
CACAAACATGTGTGCGTTAAAGTCCTCTTTCTTAATAGACCACTTCTAAGTCAACAAGCAGGGA
CTAGGATAAATTCAAGATTTTCTCTTCCTTCAACCTCTTAGACAATATGTTTGTTTGATCATCC
ATCTGATATTAAATTTCCACCAACGCAACAACAAAGGTAGACCGTGCTATTACATTTCCACCAG
GGTAGCAACCAGATTTAGAAATACGATCTGATATTTTTTTTCAATCATTCAATTTATATGCTAT
ATATATAATTCATTAAAATGTAATTTCTTTTTTAGTTGCATCTCATAGAACAGACACCAAGTCT
TTGGGTGCATGGTAAGTTCCAATGAAATAAAAGAGATCAAAACAACAACCAAGAAACAACCCTA
CATGGTTACTGTTATAGATCCGCAAAAATGAACCACAAGTATTAAGGTCAGCTGTAAATTTTGT
AACCTCGGTACTTGCATCAGTCAAATTTTTCTTTCTATTCCTCTTCTCCATATGCTTCTATCCC
CATTTACGAAGGACAATCAAGATCCAAGTATTAATTGATAGGTGATCAGTATAATACTCTAGTA
CACGTTCCAGAGTTTGAGTGCCAACAACTCGAATGACATTCTTACCTGTAGAACTAACCCCATC
CAAATTCATACAGTGTGGGCTCCAAGCATATAAATCGACTAGATGACCAAATCTGTTGACAATG
TGAACATAGTAAAGATAAGTTGGAGAATTCTGTAAGTGTTTATAAACAAGATAATAGTGTATAA
AAATTTACCTGTCTCCCCCATTACCATCTCTGTTGTCGACTGGGTTTCCACCATACAATCTGCC
AGGGATAGCATTTCCAATTGAGAAGTGCATGATATCGACTTCGTGCCCACGACAAGTTTTTTTG
TTGCATGCATCAGGTGATTGCTTACACCCACCCATCTATTCCAACAATTTAATCCACATTTTAG
GCAATAAAAGATATCAAACAGAAACACAAGAAAGCTGTATTTTCCTTTTCTGGATAGACACATT
TGCAGAAGTTAGCATAACCCGTAAACAAACGAGCACAACTTACACTATGATATGTGGCACTCTC
ACCAACTTGAAACATCAGTGCTACAGATGGGCAATTATTGTCATTTCTGCATCATTAAAAAGAA
ATCCTAAGTACGGTCGCATGAAATAAACAATATACCATGATTAAGTTGATAACATGTTACATCT
GTTGTACAAGTACCATAAAAAAAAATGAAGTCAGTAACTCAGACACAAAACATAGAGAGTTAAC
AATCACAAAATATAGGCAGTTACCCACTCATGTAACACAGTGGAACTTGTGATGAAAGCATGAA
AGAAGTCAGAGCAGTTTCAATCCCCAGGATGTGCACATCTGATACCTCAGTTTAATAGAGAGGA
AGAAATTAAAGGTGCATGCCTTTTGGTCAAATAATTTATGTAGGATGATAACATTTGCTTTTCC
ATGCAATACATTTCAGAAATTCTGTTGTATGTTCACACAAAATGAGATAGAATATCCATTATTT
CTATGTAGACACAATGCCGACACCTCTTTTAAGCAGTTTTACAAGTTTCAATTATCTTGGCCTA
ACTACATGCACTTCATCCCACAAAGAAGAAAGTTATTCAATAAAACACAAAACCTTCCCCTTAA
GAATCAAAAAGTATATACCGTGTGCACATAGTTTTAAGATGTGATTGACCAGGCTTGACGAAAA
ATAAGGAAAGAAAGTACTCGTGAAGGTTCTGCAATATTTGAGTTGGCTGCAAGTATTATTAAAA
ATGATTGTTAAAAGGTGTAAGGAAGATTAGTTTAATAGCCTTCTCAAAAAAAAAAAAAGATTAG
TTTAACGTCAATATTAGGATGACTTGAGAAAGGAAAGAAGAAGCCGAGCTTAAACTGATTAGGT
AACTGCCCACATTACATACTTAGAATGACGTATTGTACATATTTAATGTCACTTTAATAGGCTA
TAAGCATGAACTAAAAACAACCGCCAAAAAGAGGAGAAGATTCAAGTATTTGAGTTTATGAGAC
CTAGAAGAGGTCTATGTATGGATTTGGCAGTTGGATTCATCATCACTTTTCTTTTAGATAAGTA
GGATTCATTGTCACATCGATCTCATGATTCAGGAATATGGCTCAGGTGTCAATATGCGGTTGAT
ATATGTATAATATTTTTGGTGTGTGTACAAACTTCAAAATGGAAAACTTAAAACCTAGTCAAAC
TATTGTTGTCGGCCATATTTGTAGTCCATACAACCCATGTGAACTAGCTGAATCCGGTATGCAT
ATCATACTGACACCTACAATCACACCCACACCCACACCCAAGTCAATTAAGATTGGAACAGGTG
GTTGGGCAAGTTGAATGATCCATGTGAAATAAGGAAGAAGTTTGACATTAATTTTATATTTATA
TCTATAGAATTCCTATAAAGAGGAAGGGCTATTTATATCTTTTTTATGCCCCAAAAGTTTCGTA
AAAGGACGTAAAAAAAAGGGAGCAGCGTAATGTAAAAAATTCTTTAAGGTCTGAAAACAAAATA
TAGTGATTCAACTTATAACATTAATGAAAAGCATAAATGTCGGATGTAAAAGAAAAAAAAATCC
CAACATGCCTTCAGACATCAATTTTCCAGTGGTTCTTTTTTGGATAATGAAGTAATCCAGTGAG
TGAGAATTCTGATACAAAAACCATCTCTCTTGCATTTGTGACAAATCAAAAGAACGAATAAGTT
ACCATCATATTTCATAACAACAGTTGCAGAAGATAGTAGCCATGAGTAATGACTTCAGGATGAT
TAGGCATGCGCACATAATGACTTATTGAGAAAATGCATGAGTCTTTATACCAAAAAAGGAGAAA
AAGATCATCCTCACTTTTCCTTTTTGTATAAAACATACCAATAGTCTCTATTCTACAGTCTTTT
TCAACTCTATAGCAATATCTCACATTATTTGAGACAATGATTATGTGATGAAAGTATACCAGTG
CAGATAGAAATGATCTTCTAGGGCACATGCTTGCAGTAATTGTTGACTGACCGTGATGGAAGGC
TCTTCGACAATGTTACAGAAATTATAATGTTTTCCCCCACCCCAACCGTTAAAAGTAAATAAAG
CACATTTTCCATGCATCACCTCATCTTACAACCTTCCACTTTGGACCAAAATTTTCAGGAAATT
CACTCGCTAATACCACTTGAATGCTACCTTAAATTTATTTGGGCAAATGTCAAGCACTGTCAAC
TTTTTGGCTCACTCATCTTGTTCTCGTCTTTATCCTAAACATTGCCTCATGCTAATACACTAGT
CTTTTTCCATTTGTTTTAGTTCATTTCAAACTTAACTAGACCTAAGAAAATCTTCCCCACTAAA
GCTCAATCCAGTGTGACTTTCTTTTTTTATTATTTCAGAAGTTCATCTCTAACTCCCAAATCTG
GCTTCCCTTCTTCCCAACCACAACTAGGAAATAGTGCACATCCTTGCAATCAAAACCTTACATG
TCAATATTGAATAACCCTCAAAAACCACAACTAGGGAATAGTGCACATCCTTGCCATCAAAACC
TTACATGTCAAGATTGAATAACCCTCAAAATCACGATTTTTCACAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.165852799
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017