Plant Circular RNA Database

Detail information of Os07g0693500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0693500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_035446
					
						Alias
						Os_ciR619
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 29507568-29508131  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							Os07g0693500						
					
						Parent gene annotation
						
							Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L
). Splice isoform Ex1A-3. (Os07t0693500-01);Hypothetical gene. (
Os07t0693500-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						76/41
					
						Tissues
						root/shoot, root, seed, pistil
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0693500-01:3

General Information
CircRNA Name	Os07g0693500_circ_g.1
ID in PlantcircBase	osa_circ_035446
Alias	Os_ciR619
Organism	Oryza sativa
Position	chr7: 29507568-29508131 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	Os07g0693500
Parent gene annotation	Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L ). Splice isoform Ex1A-3. (Os07t0693500-01);Hypothetical gene. ( Os07t0693500-02)
Parent gene strand	+
Alternative splicing	NA
Support reads	76/41
Tissues	root/shoot, root, seed, pistil
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0693500-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: CTGTTGCTGATGCTACTACCT
 R: TCAATTTCATCAGGAGATGGAGTC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: CTGTTGCTGATGCTACTACCT R: TCAATTTCATCAGGAGATGGAGTC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGA
ACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGagactccatctcctgatgaaattgaagc
atacaaggttcttcagaaatgtcttgagctacgagagaagtacatgtttagagaagaagttgct
ccatggga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 171
Transcript exons: 29507568-29507640,29508034-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGA
TATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 184
Transcript exons: 29507568-29507668,29508049-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGCTGATATGCACTATATCCTTCGTGTGT
TGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 193
Transcript exons: 29507568-29507713,29508085-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACA
G
Transcript length: 195
Transcript exons: 29507568-29507691,29508061-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGATAT
CCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA
CAG
Transcript length: 195
Transcript exons: 29507568-29507713,29508083-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA
CAG
Transcript length: 205
Transcript exons: 29507568-29507714,29508074-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAA
TCTTCTAGAACAG
Transcript length: 210
Transcript exons: 29507568-29507731,29508086-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGGGATATTCGAACTGTATGTTATAAACGT
TTAAATCTTCTAGAACAG
Transcript length: 213
Transcript exons: 29507568-29507693,29508045-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTATT
TACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAA
CGTTTAAATCTTCTAGAACAG
Transcript length: 216
Transcript exons: 29507568-29507665,29508014-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGAATCTATCCTGTTGCTGATGCTACTACCTT
TTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTAT
AAACGTTTAAATCTTCTAGAACAG
Transcript length: 227
Transcript exons: 29507568-29507718,29508056-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAA
CTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 232
Transcript exons: 29507568-29507708,29508041-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATAT
TCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 234
Transcript exons: 29507568-29507696,29508027-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CGCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGAT
ATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 259
Transcript exons: 29507568-29507713,29508019-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACATCCTGTTGCTGATGCTACTACCTTTTTTACTGATATGCACTATAT
CCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA
CAG
Transcript length: 283
Transcript exons: 29507568-29507728,29508010-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGAGAAAGAATCTATCCTGTTGCTGATGCTACTAC
CTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGT
TATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 287
Transcript exons: 29507568-29507725,29508003-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGCTAAAGAAAGAATCTATCCTGTTGCTGATGCTA
CTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGT
ATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 297
Transcript exons: 29507568-29507746,29508014-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAAAATCTATCCTGTT
GCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATA
TTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Transcript length: 359
Transcript exons: 29507568-29507746,29507841-29507892,29508004-29508131
AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAACATCATTTTGAAA
TGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGCTAAAGAAAGAATCTATCCTGTTGC
TGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATT
CGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
						
					

						Genomic sequence
						
							AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA
GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT
CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAAGTGAGTGTGTTTC
CCTATATTTTCTGCATATTAACGATACAACACGTTTTCCTGCTCTGCTTTCTGTACTCTAATTT
TGTTTTCCTTCCTTCAGCATCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAA
AGACGGTGAGTAACAAATTATTCTTTCTCTTTTAGTTTACGACTACTCATATTTTGTCGAAGTT
TTTTCTTTTCATGTTCGTCGTCACTTATTTTTGTCTTCCTCTGTTGCTGCAGCTAAAGAAAGAA
TCTATCCTGTTGCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGC
TGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
						
					

			
		

Sequences
Splice junction sequence	TGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGA ACTGTATGTTATAAACGTTTAAATCTTCTAGAACAGagactccatctcctgatgaaattgaagc atacaaggttcttcagaaatgtcttgagctacgagagaagtacatgtttagagaagaagttgct ccatggga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 171 Transcript exons: 29507568-29507640,29508034-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGA TATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 184 Transcript exons: 29507568-29507668,29508049-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGCTGATATGCACTATATCCTTCGTGTGT TGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 193 Transcript exons: 29507568-29507713,29508085-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACA G Transcript length: 195 Transcript exons: 29507568-29507691,29508061-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGATAT CCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA CAG Transcript length: 195 Transcript exons: 29507568-29507713,29508083-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA CAG Transcript length: 205 Transcript exons: 29507568-29507714,29508074-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAA TCTTCTAGAACAG Transcript length: 210 Transcript exons: 29507568-29507731,29508086-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGGGATATTCGAACTGTATGTTATAAACGT TTAAATCTTCTAGAACAG Transcript length: 213 Transcript exons: 29507568-29507693,29508045-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTATT TACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAA CGTTTAAATCTTCTAGAACAG Transcript length: 216 Transcript exons: 29507568-29507665,29508014-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGAATCTATCCTGTTGCTGATGCTACTACCTT TTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTAT AAACGTTTAAATCTTCTAGAACAG Transcript length: 227 Transcript exons: 29507568-29507718,29508056-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAA CTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 232 Transcript exons: 29507568-29507708,29508041-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATAT TCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 234 Transcript exons: 29507568-29507696,29508027-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CGCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGAT ATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 259 Transcript exons: 29507568-29507713,29508019-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACATCCTGTTGCTGATGCTACTACCTTTTTTACTGATATGCACTATAT CCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAA CAG Transcript length: 283 Transcript exons: 29507568-29507728,29508010-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGAGAAAGAATCTATCCTGTTGCTGATGCTACTAC CTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGTATGT TATAAACGTTTAAATCTTCTAGAACAG Transcript length: 287 Transcript exons: 29507568-29507725,29508003-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGCTAAAGAAAGAATCTATCCTGTTGCTGATGCTA CTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATTCGAACTGT ATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 297 Transcript exons: 29507568-29507746,29508014-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAAAATCTATCCTGTT GCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATA TTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG Transcript length: 359 Transcript exons: 29507568-29507746,29507841-29507892,29508004-29508131 AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAACATCATTTTGAAA TGGTTGATGGTGTTATTCATGTATACCCCAATAAAGACGCTAAAGAAAGAATCTATCCTGTTGC TGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGCTGCTGGGGATATT CGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG
Genomic sequence	AGACTCCATCTCCTGATGAAATTGAAGCATACAAGGTTCTTCAGAAATGTCTTGAGCTACGAGA GAAGTACATGTTTAGAGAAGAAGTTGCTCCATGGGAGAAGGAAATCATAACTGATCCTAGTACT CCAAAACCTAATCCTAACCCTTTCTATTACGAGCAGCAGACTAAAACTGAAGTGAGTGTGTTTC CCTATATTTTCTGCATATTAACGATACAACACGTTTTCCTGCTCTGCTTTCTGTACTCTAATTT TGTTTTCCTTCCTTCAGCATCATTTTGAAATGGTTGATGGTGTTATTCATGTATACCCCAATAA AGACGGTGAGTAACAAATTATTCTTTCTCTTTTAGTTTACGACTACTCATATTTTGTCGAAGTT TTTTCTTTTCATGTTCGTCGTCACTTATTTTTGTCTTCCTCTGTTGCTGCAGCTAAAGAAAGAA TCTATCCTGTTGCTGATGCTACTACCTTTTTTACTGATATGCACTATATCCTTCGTGTGTTGGC TGCTGGGGATATTCGAACTGTATGTTATAAACGTTTAAATCTTCTAGAACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007457* osi_circ_017528 						
					
						PMCS
						0.522481797

Conservation Information
Conserved circRNAs	osi_circ_007457* osi_circ_017528
PMCS	0.522481797

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							29507640-29507678(+)
						
						Potential amino acid sequence
						
							MFREEVAPWEKEIITDPSTPKPNPNPFYYEQQTKTEHHFEMVDGVIHVYPNKDAKERIYPVADA
TTFFTDMHYILRVLAAGDIRTVCYKRLNLLEQRLHLLMKLKHTRFFRNVLSYERSTCLEKKLLH
GRRKS*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	29507640-29507678(+)
Potential amino acid sequence	MFREEVAPWEKEIITDPSTPKPNPNPFYYEQQTKTEHHFEMVDGVIHVYPNKDAKERIYPVADA TTFFTDMHYILRVLAAGDIRTVCYKRLNLLEQRLHLLMKLKHTRFFRNVLSYERSTCLEKKLLH GRRKS*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0693500_circ_g.1

Address

Any questions?

Supported by