Detail information of BGIOSGA025476_circ_g.3


General Information
CircRNA Name BGIOSGA025476_circ_g.3
ID in PlantcircBase osi_circ_017688
Alias Chr07:8921399_8921569(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 8978266-8978436  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, find_circ
Parent gene BGIOSGA025476
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA025476-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAGTATTAACCACGCAGTAAACTAGAAGATCTCCAAAATGGTGAAAGAAATGAAAAAAAGTT
TGCAATCTATCAAGCTTGAATggtatattttacctgaactctaaccttgtttacaaattaacca
agtactatctgtgaactatttttttaatgaccagttcaagtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATATTTTACCTGAACTCTAACCTTGTTTACAAATTAACCAAGTACTATCTGTGAACTATTT
TTTTAATGACCAGTTCAAGTGGTATAGTATTAACCACGCAGTAAACTAGAAGATCTCCAAAATG
GTGAAAGAAATGAAAAAAAGTTTGCAATCTATCAAGCTTGAAT
Conservation Information
Conserved circRNAs osa_circ_033353 osa_circ_033354 osa_circ_033355
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021