Detail information of BGIOSGA000563_circ_g.1


General Information
CircRNA Name BGIOSGA000563_circ_g.1
ID in PlantcircBase osi_circ_002504
Alias 1:38797900|38799358
Organism Oryza sativa ssp. indica
Position chr1: 38797900-38799358  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA000563
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA000563_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA000563-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTCCATTATCACGACAGTAGTTCAAAAGGGGTTCATACTCCTGCCAGCGCTCTGGTGCCCAG
TGAGAAGTGTACAACCTTAAGTTGTTGCCATCAATTttggaatcggtgaatcagttcagccata
acaggatatttctcaaggtcaaaaaagttttgcagtatctcaggagaaaccacgccaagatcta
ttcctttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGAATCGGTGAATCAGTTCAGCCATAACAGGATATTTCTCAAGGTCAAAAAAGTTTTGCAGT
ATCTCAGGAGAAACCACGCCAAGATCTATTCCTTTCTGAAGATCCTGTCATAAATTTAAAGCAG
AATGTACCATTAGCTCAAATTCTTAGAGATAAGAGGGGGAAAAGGCTGTATTAGTAAACAAAAA
CTGATTAACTATACCAAGATCTTTTACACTAATTACTTTTAAAGGAGTTCAATTGACTATTCGA
TGAAAAAATCACTTGTTTTTACAGACTCTTCATCAAATATATGTCTCTCTGCCAATAGCTATAC
TTTTCCATTGGACTTAACACCTCTATGCACAGCATTTACAATTATTAGGTTATGTAACACCACA
GATATTTGAGCAAGAGCGAGTGATACCTGGGGTAATGCTTCTCGCCTCCTACCAGCCGCATTCA
TAACTCTAGCAATTTCAGCACGGTCAAAGCAATTTCGACTGCATGGCTTGGCAGCAGAGTACCA
CAAGAAATCAGCTACAGGGATTTCACCTTCTCTCCTAATACCTTGCCTCTCAGGATTAAGAAGT
ACTACAACTTGTTTCTTCTTTTGCATCTTTTTAGATATTCTAGCAGGGACTCCAATTCCACGTG
AACCATATATAACATGGCTTGAACCAGTTACAACAACAAGCATCCCTGAAGGATCTCCATTAGT
AATTTCTTTCATTATTTTTTGGGACATGGTATAATCATCAACTACTCTTGCCTGTGCAGATAGG
TACGAGCTTGGGCCAAATGGAGAGCCATGAATTGCTGAAATCTTGTCTATCAATGATCGGCCTG
AGATGGATGTAAAACCAGAAATGAAGCCTGAGCCAGCTGGAGGAGCGTACAGCTTTCTTTGTGC
TTTTGAAAGGCCTCTAATTCCTTCTGCTTGGACAGTTCTTGACACCTAGCCAGAAAATGGACTA
TATAATTGTATTTCAACCAAATATTGTAAATGATGAAAAGTAAACCATATATTTAGCATAATGC
ATATCAGAACATTTACTTGGGCATGGGAGAAAAGGAGGGTGGAGGGGGTTATAATAGGAGTCAT
TTTCTGGACATGGGCCAAAAAAAAAAGGTGTAGAACAGGCCCATATTCAGTTGGTAAAAACACT
AGACTAACTATAAAATACAAGAAAAAACTTGCCAGTTGGAATGGTGTAATATCAATATAAAATG
ACTACATTGCAACTTGTCTACAAAATAAGAATGATCAATAAAAAATACTGTTATGGCAATACAA
CTGAATTGATCACATGCACTTTTTGGGGGCAATGTAACATATGGATTACCTCAAGTGGAGTTCC
ACAGGCAACAAGTTTGACTCCATTATCACGACAGTAGTTCAAAAGGGGTTCATACTCCTGCCAG
CGCTCTGGTGCCCAGTGAGAAGTGTACAACCTTAAGTTGTTGCCATCAATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 38798632-38799355(-)
Potential amino acid sequence MSQKIMKEITNGDPSGMLVVVTGSSHVIYGSRGIGVPARISKKMQKKKQVVVLLNPERQGIRRE
GEIPVADFLWYSAAKPCSRNCFDRAEIARVMNAAGRRREALPQDLQKGIDLGVVSPEILQNFFD
LEKYPVMAELIHRFQN*(-)
Sponge-miRNAs osa-miR1435
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021