Detail information of AT1G29040_circ_g.2


General Information
CircRNA Name AT1G29040_circ_g.2
ID in PlantcircBase ath_circ_004749
Alias Ath_circ_FC5572
Organism Arabidpsis thaliana
Position chr1: 10134739-10135162  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ
Parent gene AT1G29040
Parent gene annotation 50S ribosomal protein L34
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered AT1G29040.2:2
AT1G29040.4:2
AT1G29040.3:2
AT1G29040.5:2
AT1G29040.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAATGGGT
GATACAAATGAAGATTGCTACATAGTGAATGTCGCAgtgcctcattctcttcaccagcagctgg
atttggacaaggttaagtctatcttcccatagtaagttcctcaagtaacctctatcatagagtt
taaatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCCTCATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAGTAAG
TTCCTCAAGTAACCTCTATCATAGAGTTTAAATTTGGCTTGGTACTAGATATAAGTTGTTTTGA
AGTTGGATTAAGATTGGTGTTGTGAAAAAGTAGAAAGAAACAACCATTACCGTTTACTTATTTG
ATCATGTATAGTGTTTGTGGGAAAACATCTCTCATTTTGTTACTTAGTCTTGGACAACATCTCT
TGAGTCAGCTTTATCTACCATGTTTTCACAATCATTCGTTCCTTTTTTGTTTGAAGTGGGAAGA
TTGTGAATGTAGAGGTGGTGGATGGAGGACTGATTTGCTCAAGCGGTGTTCTAGTCGAAGAAAT
GGGTGATACAAATGAAGATTGCTACATAGTGAATGTCGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.125195361
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a