Detail information of Os03g0274000_circ_g.3


General Information
CircRNA Name Os03g0274000_circ_g.3
ID in PlantcircBase osa_circ_019107
Alias NA
Organism Oryza sativa
Position chr3: 9222081-9222847  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0274000
Parent gene annotation Oxysterol-binding protein family protein. (Os03t0274000-01);Simi
lar to oxysterol-binding protein. (Os03t0274000-02)
Parent gene strand +
Alternative splicing Os03g0274000_circ_g.1 Os03g0274000_circ_g.2 Os03g0274000_circ_g.4 Os03g0274000_circ_g.5 Os03g0274000_circ_g.6 Os03g0274000_circ_g.7 Os03g0274000_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0274000-02:1
Os03t0274000-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAA
AGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGttgatggaatactgtgaacttttagaca
aagcagatgaatgcgaagacccgtacatgcgtatggcatatgcctgtaagttttgcaccttccc
ttgtgagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 491
Transcript exons: 9222081-9222153,9222229-9222347,9222463-9222584,9222671-
9222847
TTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGTACATGCGTATGG
CATATGCCTCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTACCTGGAAGCCTTTCAA
TCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTATTGCTGAGCAG
GTAAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCA
CCTCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGACTAG
AGTGTCACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCACCACTCACGAAGGTCAACAAC
TTGATATTTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTG
GAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGG

Genomic sequence TTGATGGAATACTGTGAACTTTTAGACAAAGCAGATGAATGCGAAGACCCGTACATGCGTATGG
CATATGCCTGTAAGTTTTGCACCTTCCCTTGTGAGCAATGCCTTTAATATCCTTGTTGTTTGAT
CTTTTAACTTAACTTTTCAGCTGCATGGGCTGTATCGGTCTACTTTGCATACCAGCGTACCTGG
AAGCCTTTCAATCCCATCCTTGGGGAGACATATGAGATGGTTAACCACCAGGGTATTTCATTTA
TTGCTGAGCAGGTTAGTGATATCACCATTGCAGAAACCTTCTGCAAACATCTTCTGCCAGCCAA
TGATGCTGGTTCCACAGTTCTTTACTGCATGCCATCGATAATTTTTCATTTTATTTTCTCAGGT
AAGCCATCATCCTCCGATGGGTGCCGCTCACTGTGAAAATGCACATTTTACATATGACATCACC
TCCAAGTTGAAGACCAAATTCTTGGGGAACTCTCTGGAAGTTTATCCACTTGGAAGGTAATTTT
GTCAAACTGTGATTGTTTCAGGATTATGAATAAACCAGCTCTTTATATCCTAAATGGTTTTTTG
TTTCTGCATCACAGGACTAGAGTGTCACTTAAGAAGTCCGGTGTCAAGCTGGAATTGGTACCAC
CACTCACGAAGGTCAACAACTTGATATTTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGT
ATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGG
Conservation Information
Conserved circRNAs osi_circ_014197
PMCS 0.310715482
Functional Information
Coding potential Y
Potential coding position 9222085-9222081(+)
9222834-9222081(+)
9222138-9222735(-)
9222260-9222824(-)
Potential amino acid sequence MEYCELLDKADECEDPYMRMAYASAWAVSVYFAYQRTWKPFNPILGETYEMVNHQGISFIAEQV
SHHPPMGAAHCENAHFTYDITSKLKTKFLGNSLEVYPLGRTRVSLKKSGVKLELVPPLTKVNNL
IFGRTWVDSPGEMVLTNLTTGDKVVLLFQPCGWFG*(+)
MWLVWLMEYCELLDKADECEDPYMRMAYASAWAVSVYFAYQRTWKPFNPILGETYEMVNHQGIS
FIAEQVSHHPPMGAAHCENAHFTYDITSKLKTKFLGNSLEVYPLGRTRVSLKKSGVKLELVPPL
TKVNNLIFGRTWVDSPGEMVLTNLTTGDKVVLLFQPCGWFG*(+)
MYGSSHSSALSKSSQYSINQTSHMAGIKAQLCLQLSGLSIPSLQENQPKYAQISSC*(-)
MQSRPIQPMQRHMPYACTGLRIHLLCLKVHSIPSTKPATWLE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017