Plant Circular RNA Database

Detail information of Zm00001d018481_circ_g.3

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d018481_circ_g.3
					

						ID in PlantcircBase
						zma_circ_008847
					

						Alias
						zma_circ_0002026
					

						Organism
						
							Zea mays						
					

						Position
						
							chr5: 221581012-221582623  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						find_circ
					

						Parent gene
						
							Zm00001d018481						
					

						Parent gene annotation
						
							 myosin2
							
					

						Parent gene strand
						+
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d018481_T038:8
Zm00001d018481_T047:8
Zm00001d018481_T026:8
Zm00001d018481_T010:8
Zm00001d018481_T002:8
Zm00001d018481_T011:8
Zm00001d018481_T001:8
Zm00001d018481_T041:8
Zm00001d018481_T066:8
Zm00001d018481_T006:8
Zm00001d018481_T064:8
Zm00001d018481_T007:8
Zm00001d018481_T003:8
Zm00001d018481_T021:8
Zm00001d018481_T046:8
Zm00001d018481_T019:8
Zm00001d018481_T025:8
Zm00001d018481_T059:8
Zm00001d018481_T040:8
Zm00001d018481_T058:8
Zm00001d018481_T018:8
Zm00001d018481_T028:8
Zm00001d018481_T023:8
Zm00001d018481_T005:8
Zm00001d018481_T036:8
Zm00001d018481_T043:8
Zm00001d018481_T057:8
Zm00001d018481_T062:8
Zm00001d018481_T030:8
Zm00001d018481_T020:8
Zm00001d018481_T004:8
Zm00001d018481_T016:8
Zm00001d018481_T033:8
Zm00001d018481_T009:8
Zm00001d018481_T050:8
Zm00001d018481_T063:8
Zm00001d018481_T054:8
Zm00001d018481_T042:8
Zm00001d018481_T017:8
Zm00001d018481_T048:8
Zm00001d018481_T034:8
Zm00001d018481_T065:8
Zm00001d018481_T051:8
Zm00001d018481_T022:8
Zm00001d018481_T044:8
Zm00001d018481_T049:8
Zm00001d018481_T039:8
Zm00001d018481_T029:8
Zm00001d018481_T053:8
Zm00001d018481_T037:8
Zm00001d018481_T045:8
Zm00001d018481_T027:8
Zm00001d018481_T032:8
Zm00001d018481_T015:8
Zm00001d018481_T061:8
Zm00001d018481_T055:8
Zm00001d018481_T012:8
Zm00001d018481_T052:8
Zm00001d018481_T035:8
Zm00001d018481_T013:8
Zm00001d018481_T008:8
Zm00001d018481_T014:8
Zm00001d018481_T031:8
Zm00001d018481_T024:8

					

			
		

General Information
CircRNA Name	Zm00001d018481_circ_g.3
ID in PlantcircBase	zma_circ_008847
Alias	zma_circ_0002026
Organism	Zea mays
Position	chr5: 221581012-221582623 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d018481
Parent gene annotation	myosin2
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d018481_T038:8 Zm00001d018481_T047:8 Zm00001d018481_T026:8 Zm00001d018481_T010:8 Zm00001d018481_T002:8 Zm00001d018481_T011:8 Zm00001d018481_T001:8 Zm00001d018481_T041:8 Zm00001d018481_T066:8 Zm00001d018481_T006:8 Zm00001d018481_T064:8 Zm00001d018481_T007:8 Zm00001d018481_T003:8 Zm00001d018481_T021:8 Zm00001d018481_T046:8 Zm00001d018481_T019:8 Zm00001d018481_T025:8 Zm00001d018481_T059:8 Zm00001d018481_T040:8 Zm00001d018481_T058:8 Zm00001d018481_T018:8 Zm00001d018481_T028:8 Zm00001d018481_T023:8 Zm00001d018481_T005:8 Zm00001d018481_T036:8 Zm00001d018481_T043:8 Zm00001d018481_T057:8 Zm00001d018481_T062:8 Zm00001d018481_T030:8 Zm00001d018481_T020:8 Zm00001d018481_T004:8 Zm00001d018481_T016:8 Zm00001d018481_T033:8 Zm00001d018481_T009:8 Zm00001d018481_T050:8 Zm00001d018481_T063:8 Zm00001d018481_T054:8 Zm00001d018481_T042:8 Zm00001d018481_T017:8 Zm00001d018481_T048:8 Zm00001d018481_T034:8 Zm00001d018481_T065:8 Zm00001d018481_T051:8 Zm00001d018481_T022:8 Zm00001d018481_T044:8 Zm00001d018481_T049:8 Zm00001d018481_T039:8 Zm00001d018481_T029:8 Zm00001d018481_T053:8 Zm00001d018481_T037:8 Zm00001d018481_T045:8 Zm00001d018481_T027:8 Zm00001d018481_T032:8 Zm00001d018481_T015:8 Zm00001d018481_T061:8 Zm00001d018481_T055:8 Zm00001d018481_T012:8 Zm00001d018481_T052:8 Zm00001d018481_T035:8 Zm00001d018481_T013:8 Zm00001d018481_T008:8 Zm00001d018481_T014:8 Zm00001d018481_T031:8 Zm00001d018481_T024:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTATTGTTTATGCTTTCAGATCTTGAGTGTTCAACAACTGTACAGAATATGTACACAATACTGG
GATGACAAGTATAATACCCAAAGTGTTTCATCAGACaacgaggatgacaatgacaaccttgctt
actggctctccaatacatctagcttattgttcctactgcagagaagtctcaaggctgctggtgc
tcctggta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AACGAGGATGACAATGACAACCTTGCTTACTGGCTCTCCAATACATCTAGCTTATTGTTCCTAC
TGCAGAGAAGTCTCAAGGCTGCTGGTGCTCCTGGTAGCGTTTCACGAAAGAAACCTCCTCAACC
AACATCATTATTTGGAAGAATGGCCCAAGTACGCTACTGACCTTTGGCACTTGAAAACTGAATT
AATGAGTTGGAGAATATGACGTAACATAAATCCATTTGTCTAGGGCTTGCGTTCTGCATCTTTT
GCCAACATGCATGTTGAAGCGACAGATGTTGTGCGCCAAGTTGAGGCCAAATATCCTGCCTTGC
TTTTCAAGCAGCAGCTAACTGCTTATGTGGAGAAGATATATGGAATCGTCCGAGACAATATTAA
AAAGGAATTATCATCTTTGATTTCGCTATGTATCCAGGTAGCATATCTTATCTGTAGTTTCTTT
ACTGCTTGTTGACAAATTCATATTTAACATTTGGTTCTAAACATGTGACTCAAAAAGACTTATA
GTTTATGATAAACTGTTTATCACCTTTGATTTCTTTTAATCACAAGGCTCCAAGAACAATGAAA
GCTAGCATGCTGCGAGTTTCTGGACGATTATCCAGTCAATCTCAGAGTCAGAGCAACCACTGGC
AGAAAATCATTGAGAGCTTGGATAAGCTCTTGAAGATACTGCAAGATAACCATGTATGTGTCTC
ATTGTTTCCATATGATTCACTTGTGCTGATCTGCTGGATGTCTGTTCACCGTTGCCTTGTTAAT
CCTCAGGTGCCTCCGGTTTTAGCTCAGAAAATATTTACCCAGATATTTTCATACATTAATGTCC
AGCTATTCAACAGGTGCACTTATTTTTCAGTGTCTTGACTTTCATGTTTGTGGAAACTAGCATG
GTCAATGGTCGTGGTTTTGTTCTGCAGTCTATTGCTTCGTCGTGAGTGTTGCTCCTTCAGCAAC
GGAGAGTATGTTAAGGCTGGTCTAGCTGAGTTGGAGCTGTGGTGTGCAAAGGCAACAACTGAGG
TGATCCACTTTCTGCGGTAGCTTGCTTTATTTTATTTTATTGATTAGCACTGAAGTTTTGTGGT
TACAGTATGCAGCATCTTCATGGGATGAGCTCAAGCATATCAGGCAGGCTGTTGGATTTTTGGT
ATGACCAGTTCTACCAAATTATGCATTCTAATATATTCACGCTGAGACTCTAGATACAGTTATG
AGATCAATTGAGTTTTATATTCATAGTTTGGACAGGAGACGAACACAACAATTTCTGTAGTTTG
ATCTTGAGTTTAAACTGTTGTTCCCTTTTTTAGAGGCAGACTCATGTATTGTTGATATTTTTTC
AGGTTATATTCCAGAAGTTCAGAATATCTTATGATGAGATAGTCAATGACCTATGTCCGGTAAA
ATCTTAGTTCTCAAGGATACATTTAATGTCGAATCTCTCGTATTGCTCTCTCTCTACTTTGTTT
CACTAGCAGAGTATAGAGGCATCTTTTTCTAATACATGTCCTATTGTTTATGCTTTCAGATCTT
GAGTGTTCAACAACTGTACAGAATATGTACACAATACTGGGATGACAAGTATAATACCCAAAGT
GTTTCATCAGAC
						
					

			
		

Sequences
Splice junction sequence	CTATTGTTTATGCTTTCAGATCTTGAGTGTTCAACAACTGTACAGAATATGTACACAATACTGG GATGACAAGTATAATACCCAAAGTGTTTCATCAGACaacgaggatgacaatgacaaccttgctt actggctctccaatacatctagcttattgttcctactgcagagaagtctcaaggctgctggtgc tcctggta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AACGAGGATGACAATGACAACCTTGCTTACTGGCTCTCCAATACATCTAGCTTATTGTTCCTAC TGCAGAGAAGTCTCAAGGCTGCTGGTGCTCCTGGTAGCGTTTCACGAAAGAAACCTCCTCAACC AACATCATTATTTGGAAGAATGGCCCAAGTACGCTACTGACCTTTGGCACTTGAAAACTGAATT AATGAGTTGGAGAATATGACGTAACATAAATCCATTTGTCTAGGGCTTGCGTTCTGCATCTTTT GCCAACATGCATGTTGAAGCGACAGATGTTGTGCGCCAAGTTGAGGCCAAATATCCTGCCTTGC TTTTCAAGCAGCAGCTAACTGCTTATGTGGAGAAGATATATGGAATCGTCCGAGACAATATTAA AAAGGAATTATCATCTTTGATTTCGCTATGTATCCAGGTAGCATATCTTATCTGTAGTTTCTTT ACTGCTTGTTGACAAATTCATATTTAACATTTGGTTCTAAACATGTGACTCAAAAAGACTTATA GTTTATGATAAACTGTTTATCACCTTTGATTTCTTTTAATCACAAGGCTCCAAGAACAATGAAA GCTAGCATGCTGCGAGTTTCTGGACGATTATCCAGTCAATCTCAGAGTCAGAGCAACCACTGGC AGAAAATCATTGAGAGCTTGGATAAGCTCTTGAAGATACTGCAAGATAACCATGTATGTGTCTC ATTGTTTCCATATGATTCACTTGTGCTGATCTGCTGGATGTCTGTTCACCGTTGCCTTGTTAAT CCTCAGGTGCCTCCGGTTTTAGCTCAGAAAATATTTACCCAGATATTTTCATACATTAATGTCC AGCTATTCAACAGGTGCACTTATTTTTCAGTGTCTTGACTTTCATGTTTGTGGAAACTAGCATG GTCAATGGTCGTGGTTTTGTTCTGCAGTCTATTGCTTCGTCGTGAGTGTTGCTCCTTCAGCAAC GGAGAGTATGTTAAGGCTGGTCTAGCTGAGTTGGAGCTGTGGTGTGCAAAGGCAACAACTGAGG TGATCCACTTTCTGCGGTAGCTTGCTTTATTTTATTTTATTGATTAGCACTGAAGTTTTGTGGT TACAGTATGCAGCATCTTCATGGGATGAGCTCAAGCATATCAGGCAGGCTGTTGGATTTTTGGT ATGACCAGTTCTACCAAATTATGCATTCTAATATATTCACGCTGAGACTCTAGATACAGTTATG AGATCAATTGAGTTTTATATTCATAGTTTGGACAGGAGACGAACACAACAATTTCTGTAGTTTG ATCTTGAGTTTAAACTGTTGTTCCCTTTTTTAGAGGCAGACTCATGTATTGTTGATATTTTTTC AGGTTATATTCCAGAAGTTCAGAATATCTTATGATGAGATAGTCAATGACCTATGTCCGGTAAA ATCTTAGTTCTCAAGGATACATTTAATGTCGAATCTCTCGTATTGCTCTCTCTCTACTTTGTTT CACTAGCAGAGTATAGAGGCATCTTTTTCTAATACATGTCCTATTGTTTATGCTTTCAGATCTT GAGTGTTCAACAACTGTACAGAATATGTACACAATACTGGGATGACAAGTATAATACCCAAAGT GTTTCATCAGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.134817204

Conservation Information
Conserved circRNAs	NA
PMCS	0.134817204

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							221581160-221582620(+)
221582590-221581346(+)
221581059-221582400(-)
						
						Potential amino acid sequence
						
							MAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIKKELSSLISLCI
QAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQKIFTQIFSYIN
VQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQAVGFLVIFQKF
RISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSSDNEDDNDNLAYWLSNTSSLLFLLQR
SLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTA
YVEKIYGIVRDNIKKELSSLISLCIQAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLL
KILQDNHVPPVLAQKIFTQIFSYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTE
YAASSWDELKHIRQAVGFLVIFQKFRISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSS
DNEDDNDNLAYWLSNTSSLLFLLQRSLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRSASFANMH
VEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIKKELSSLISLCIQAPRTMKASMLRVS
GRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQKIFTQIFSYINVQLFNSLLLRRECC
SFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQAVGFLVIFQKFRISYDEIVNDLCPI
LSVQQLYRICTQYWDDKYNTQSVSSDNEDDNDNLAYWLSNTSSLLFLLQRSLKAAGAPGSVSRK
KPPQPTSLFGRMAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIK
KELSSLISLCIQAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQ
KIFTQIFSYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQ
AVGFLVIFQKFRISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSSD(+)
MTSIIPKVFHQTTRMTMTTLLTGSPIHLAYCSYCREVSRLLVLLVAFHERNLLNQHHYLEEWPK
ACVLHLLPTCMLKRQMLCAKLRPNILPCFSSSS*(+)
MYWRASKQGCHCHPRCLMKHFGYYTCHPSIVYIFCTVVEHSRSDIGH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	221581160-221582620(+) 221582590-221581346(+) 221581059-221582400(-)
Potential amino acid sequence	MAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIKKELSSLISLCI QAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQKIFTQIFSYIN VQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQAVGFLVIFQKF RISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSSDNEDDNDNLAYWLSNTSSLLFLLQR SLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTA YVEKIYGIVRDNIKKELSSLISLCIQAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLL KILQDNHVPPVLAQKIFTQIFSYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTE YAASSWDELKHIRQAVGFLVIFQKFRISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSS DNEDDNDNLAYWLSNTSSLLFLLQRSLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRSASFANMH VEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIKKELSSLISLCIQAPRTMKASMLRVS GRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQKIFTQIFSYINVQLFNSLLLRRECC SFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQAVGFLVIFQKFRISYDEIVNDLCPI LSVQQLYRICTQYWDDKYNTQSVSSDNEDDNDNLAYWLSNTSSLLFLLQRSLKAAGAPGSVSRK KPPQPTSLFGRMAQGLRSASFANMHVEATDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNIK KELSSLISLCIQAPRTMKASMLRVSGRLSSQSQSQSNHWQKIIESLDKLLKILQDNHVPPVLAQ KIFTQIFSYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCAKATTEYAASSWDELKHIRQ AVGFLVIFQKFRISYDEIVNDLCPILSVQQLYRICTQYWDDKYNTQSVSSD(+) MTSIIPKVFHQTTRMTMTTLLTGSPIHLAYCSYCREVSRLLVLLVAFHERNLLNQHHYLEEWPK ACVLHLLPTCMLKRQMLCAKLRPNILPCFSSSS(+) MYWRASKQGCHCHPRCLMKHFGYYTCHPSIVYIFCTVVEHSRSDIGH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d018481_circ_g.3

Address

Any questions?

Supported by