Detail information of AT2G04270_circ_g.4


General Information
CircRNA Name AT2G04270_circ_g.4
ID in PlantcircBase ath_circ_012767
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1476286-1477357  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G04270
Parent gene annotation Ribonuclease E/G-like protein, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 6
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04270.4:1
AT2G04270.7:1
AT2G04270.5:1
AT2G04270.2:1
AT2G04270.3:1
AT2G04270.9:1
AT2G04270.6:1
AT2G04270.1:1
AT2G04270.8:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGAAAGGAACCAAAATTATTGTGCAAGTTGTTAAAGAGGGCCTCGGTACGAAAGGTCCAACT
CTTACTGCTTACCCGAAGCTGAGAAGTAGATTCTGGtggtttggcagatgaatgcacttccgcc
gatagtgctatagaagtcccgagaacacatctgaatgataagcaagtaggagctgaatctttct
tatgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTTGGCAGATGAATGCACTTCCGCCGATAGTGCTATAGAAGTCCCGAGAACACATCTGAAT
GATAAGCAAGTAGGAGCTGAATCTTTCTTATGTGATGAGCTTGCAGCCTTTTCGTCAGAGAACT
CAAACTTAAGTGCGTTATTTTCTGACAACTATCAGCCTATCGAGGAACCGTGGTTGATTCAAGA
ATCTATTACCTTACAACATGAAAGGAATATGCAGACTGATAGCGAACAAGATGTTGAAAGCTGT
GATGACAATGAAAATAACTTAAATACCGATGAACAAAATCACCAGCTGACTGAGACTCTCTTAC
CAGATGGTGGATTTTTCCAATCAGAATCCATTGCTACTACGATACTGATCAATTCTTCTATATG
TACGGTGCAAAGGATTGCTGTATTGGAAGGTGGAAAGCTGGTCGAGTTATTGTTGGAACCAGTT
AAGACCAATGTGCAGTGTGATAGTGTTTACCTGGGCGTAATCACTAAGTTTGTGCCCCATATGG
GTGGTGCATTTGTGAATATCGGAAGTGCTAGACATTCTTTCATGGACATTAAGTCAAACAGGGA
ACCATTCATATTCCCTCCATTTTGTGATGGATCGAAGAAGCAAGCAGCTGATGGTTCTCCGATC
CTCTCTATGAATGACATTCCAGCTCCCCATGAAATCGAACATGCTTCCTATGACTTTGAAGCCA
GTAGTTTATTAGACATTGATTCAAATGACCCTGGGGAATCTTTTCATGATGATGACGATGAGCA
TGAAAATGATGAATATCATGTCTCAGATCATCTAGCTGGACTAGTTAATGGAACTGTAGTTAAC
CATGGCGCTGTGGAAGTTGGATCTGAGAATGGCCATATTCCTATGGAGAGAGGACACTCTGCAG
ATTCTCTTGATTCGAACGCATCAGTTGCAAAAGCTTCTAAGGTGATGTCGTCTAAGGATAATAA
GTGGATTCAAGTTCGGAAAGGAACCAAAATTATTGTGCAAGTTGTTAAAGAGGGCCTCGGTACG
AAAGGTCCAACTCTTACTGCTTACCCGAAGCTGAGAAGTAGATTCTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.220982534
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5658
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017