Plant Circular RNA Database

Detail information of Os07g0632600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0632600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_034897
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 26235349-26238140  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0632600						
					
						Parent gene annotation
						
							Heat shock protein DnaJ, N-terminal domain containing protein. (
Os07t0632600-01);Hypothetical conserved gene. (Os07t0632600-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0632600_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0632600-01:8
Os07t0632600-02:1

General Information
CircRNA Name	Os07g0632600_circ_g.1
ID in PlantcircBase	osa_circ_034897
Alias	NA
Organism	Oryza sativa
Position	chr7: 26235349-26238140 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0632600
Parent gene annotation	Heat shock protein DnaJ, N-terminal domain containing protein. ( Os07t0632600-01);Hypothetical conserved gene. (Os07t0632600-02)
Parent gene strand	+
Alternative splicing	Os07g0632600_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0632600-01:8 Os07t0632600-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGG
TTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGgtctacccactcttgttgcataccctgc
agactgcagaagtccatcctgttacatgaggtgactattctagtcaaagtattgatttagatta
ctaagaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTGACT
ATTCTAGTCAAAGTATTGATTTAGATTACTAAGAGAGTGAACAATCTATTCCTGTTATTTTTTC
TTTTGCACAATGAAACCTTATGTCTTGGCTGCCTGTTCATCTTTTCCCATCTATTATAAGCATG
GGATATATGATTGTAATCAATATAACTTTGTTTTCTATGCCTAGGTACCCAGGTGAGCTTTTTG
TGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTC
CAAGGAGACATTGGTGAGGTTTATGACTGGTTAGATTTTTTAAATTGTTCCTTTTGTGGCTGTC
CCAAGATCATGCTAAGTCATAAACAGCTAATTGTTGTACAAATGAATTCTTAATTATCTCCATT
CTTCTGTTGAGCTAGCTAAGATTAATATGACCTACTATATGTTGCATACAAAACTGCCTTCCTT
GTTCCTTTGCTGGAAATCTTTCTTTTGTTATGCCAGTCATATTAATATTATCCATTTCTCCTGT
TCTTAAACACTTAGATTGTAGTTTGATTAACTGAGGTTTTACCCTTCCTTTGTCATCCCTTGTG
ACATCATGTCTTGATTTAAGGATGATCTCGACCTACCAGCTGAAGTATATGACCATGTATATGC
TCCATGCATTATTCATGTTGTATTGTTTGTTATTAGTTTAGAAGCGCGCTTTAGTTGGATAAAC
TTTTATCAAGAGGATTATGTTTTTAATACAAAGCTCTATCATTTTCAGGGGCCTGAGTTCATTG
GGAAGAGCGGCCATCATAAGGTACATTTGATTTGCTTTACCAATTATTGTGTCATACACTGGTG
CATCTATAGCTACTTGGCCTATGGAATCACTTGCATCATTGTTTATGTGCGCATGAGTATACAT
AACATATCTGGTAGAATGAACAATATTGATAGAATCATTTATAGGGATTTCTGGGTGTTTCATT
CTTACCACAATTAGTGCCGCCATCTTTTGCATGTGTTACATAGGTCAAGGTTATCTTTTTCTCA
AGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTCGACCTATGCAT
CATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTATGTCCTCTT
TGTACTACTTACTGTTAGACCTTATCCATTCCTTTATTGGTATTCAACTATTCATATGTTCATT
CAGTATTATAATTGATACCAGTAGCTGATAATTTTATAATGAATCATGATTTATTTAGGAAATG
TGGAAATTTATTCAGTTTATAGAAGGTATTTAAAACTATCAAGCATTTTAGCTTCCTCCATCTA
AATCTGTTATTGAGTTCAAAGCTACTTACTGCACATCTGCACCTTTTAGATCTCTATTGACTAT
ATTCATATTTGTAAAGGTAGTCATAAGTACTGCTACTAGCTGATGTAATAGTTTTCTAGTATTA
ACAGCTGATCTGCGATGTAATAATAGATTGGATGAATGAACTTAATTTTGTTTTGTTTTCTGTA
ACCTATGCCTTTTGCTTGCTTACTGTTCCACGACTTTTGATATGTTTATATCATATCAACCATG
ATGATCCATCCAGTGGAAAGTCCAATAGAAGAGCCTCAAGCTAGTTTTGTTCTTTATTAAACTT
TACTGCTGTGGATCTGTTTCCTAATCCTTTCCACTTATAAACAGCTCCTTCTGATAGTGATGCG
CTTAGATGTTAGATATCTGGATTTTGAAGTTGCTAAGCACCAAGAATAATTCTTTCAGGGGGCT
ATAAAGCTCTTCTGTGGAGAAAAAATGTTGGTATCTGAAACACCGTATGCAGAAATCACAGATA
GGGGCTAATCTGCTAGTGTTCAAAAGACATGATTTTCAGATCAATGAGCATTTCAATGAACAAA
CATATTTCTATATGTCATGCACACAATTAATTTACAACGAAGTCTTGTTTATTAGTGTTTTCTT
GTCTCTTTCGGAGCAGGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGG
TGCCAAGCCCATTGTATACCATGGCAAGTTTCCTTTTCATATATAGCTCTTTCGTTGTTTGGTT
TTCTGCATTGTTGAGTTCGAGGCTTACTATTTATTGCCTCTATTCCAGGAACTTTTACCAAGTC
AGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGGTACTAAGAATGAATCAGCAATATAC
CTACTTGCCATGCTACAGTTGCTTTTTCATATCTTTATTTAGAAAGAAAATATGTGCTCTCCTC
ATCATGCATCTTTCTTGTTTAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTT
GTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGC
TGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGGTACTTTTGTGTAGTTGGTACTTGGTA
GGGGTTTATGTACTTTAATTATTTTTATCTTCATTATTATCTTCCCAATTTATGTTGCCTTTGC
AATTTCAAACTTCTTCAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAA
GTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGA
CAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAG
						
					

			
		

Sequences
Splice junction sequence	TTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGACAGG TTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAGgtctacccactcttgttgcataccctgc agactgcagaagtccatcctgttacatgaggtgactattctagtcaaagtattgatttagatta ctaagaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTCTACCCACTCTTGTTGCATACCCTGCAGACTGCAGAAGTCCATCCTGTTACATGAGGTGACT ATTCTAGTCAAAGTATTGATTTAGATTACTAAGAGAGTGAACAATCTATTCCTGTTATTTTTTC TTTTGCACAATGAAACCTTATGTCTTGGCTGCCTGTTCATCTTTTCCCATCTATTATAAGCATG GGATATATGATTGTAATCAATATAACTTTGTTTTCTATGCCTAGGTACCCAGGTGAGCTTTTTG TGGATTCTGTTGTTGACTGGGTGGCAACGTCAGTTGTTGGTTTACCTCGTATCTTGTACTATTC CAAGGAGACATTGGTGAGGTTTATGACTGGTTAGATTTTTTAAATTGTTCCTTTTGTGGCTGTC CCAAGATCATGCTAAGTCATAAACAGCTAATTGTTGTACAAATGAATTCTTAATTATCTCCATT CTTCTGTTGAGCTAGCTAAGATTAATATGACCTACTATATGTTGCATACAAAACTGCCTTCCTT GTTCCTTTGCTGGAAATCTTTCTTTTGTTATGCCAGTCATATTAATATTATCCATTTCTCCTGT TCTTAAACACTTAGATTGTAGTTTGATTAACTGAGGTTTTACCCTTCCTTTGTCATCCCTTGTG ACATCATGTCTTGATTTAAGGATGATCTCGACCTACCAGCTGAAGTATATGACCATGTATATGC TCCATGCATTATTCATGTTGTATTGTTTGTTATTAGTTTAGAAGCGCGCTTTAGTTGGATAAAC TTTTATCAAGAGGATTATGTTTTTAATACAAAGCTCTATCATTTTCAGGGGCCTGAGTTCATTG GGAAGAGCGGCCATCATAAGGTACATTTGATTTGCTTTACCAATTATTGTGTCATACACTGGTG CATCTATAGCTACTTGGCCTATGGAATCACTTGCATCATTGTTTATGTGCGCATGAGTATACAT AACATATCTGGTAGAATGAACAATATTGATAGAATCATTTATAGGGATTTCTGGGTGTTTCATT CTTACCACAATTAGTGCCGCCATCTTTTGCATGTGTTACATAGGTCAAGGTTATCTTTTTCTCA AGTACCGGGGAACGTGCTGCTCCATTCCTTCGCCAAGCTGCCCAAGAGTATTCGACCTATGCAT CATTTGCATTTGTCTTATGGAAAGAAGATGAATCTCAGATTTGGTGGAATTCGTATGTCCTCTT TGTACTACTTACTGTTAGACCTTATCCATTCCTTTATTGGTATTCAACTATTCATATGTTCATT CAGTATTATAATTGATACCAGTAGCTGATAATTTTATAATGAATCATGATTTATTTAGGAAATG TGGAAATTTATTCAGTTTATAGAAGGTATTTAAAACTATCAAGCATTTTAGCTTCCTCCATCTA AATCTGTTATTGAGTTCAAAGCTACTTACTGCACATCTGCACCTTTTAGATCTCTATTGACTAT ATTCATATTTGTAAAGGTAGTCATAAGTACTGCTACTAGCTGATGTAATAGTTTTCTAGTATTA ACAGCTGATCTGCGATGTAATAATAGATTGGATGAATGAACTTAATTTTGTTTTGTTTTCTGTA ACCTATGCCTTTTGCTTGCTTACTGTTCCACGACTTTTGATATGTTTATATCATATCAACCATG ATGATCCATCCAGTGGAAAGTCCAATAGAAGAGCCTCAAGCTAGTTTTGTTCTTTATTAAACTT TACTGCTGTGGATCTGTTTCCTAATCCTTTCCACTTATAAACAGCTCCTTCTGATAGTGATGCG CTTAGATGTTAGATATCTGGATTTTGAAGTTGCTAAGCACCAAGAATAATTCTTTCAGGGGGCT ATAAAGCTCTTCTGTGGAGAAAAAATGTTGGTATCTGAAACACCGTATGCAGAAATCACAGATA GGGGCTAATCTGCTAGTGTTCAAAAGACATGATTTTCAGATCAATGAGCATTTCAATGAACAAA CATATTTCTATATGTCATGCACACAATTAATTTACAACGAAGTCTTGTTTATTAGTGTTTTCTT GTCTCTTTCGGAGCAGGTTAGGAGTGGAATCAGCTCCATCACTTGTTTTCTTGAAGGGACCAGG TGCCAAGCCCATTGTATACCATGGCAAGTTTCCTTTTCATATATAGCTCTTTCGTTGTTTGGTT TTCTGCATTGTTGAGTTCGAGGCTTACTATTTATTGCCTCTATTCCAGGAACTTTTACCAAGTC AGAGTTTACAAAGATAATGGAGGAGCATAAGCACCAAGGTACTAAGAATGAATCAGCAATATAC CTACTTGCCATGCTACAGTTGCTTTTTCATATCTTTATTTAGAAAGAAAATATGTGCTCTCCTC ATCATGCATCTTTCTTGTTTAGAACTCCCACAGCTAAGAAGCGATACATCTTTGGAGCTGGGTT GTGATGCCAGAGGTTATTCACGTGCTGGAAATGATATAGCAATTTGGTATTGTGTAATTGTTGC TGGTCGTCCTGGTATAGAGCTAAGTAAAAGGAGACAGGTACTTTTGTGTAGTTGGTACTTGGTA GGGGTTTATGTACTTTAATTATTTTTATCTTCATTATTATCTTCCCAATTTATGTTGCCTTTGC AATTTCAAACTTCTTCAGATTTTGCGGAAGGCCCAAGACCAACTATTTAGTGATGTCGATGCAA GTACTTCCGAGAATGTGGATAGTTCAGTTGTGGTATCAAGTGCCGCGGCTGCCTTAAAAGATGA CAGGTTGACCTTTGTTTGGTTGGATGGAGAAGTGCAGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.104483709

Conservation Information
Conserved circRNAs	NA
PMCS	0.104483709

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26238125-26235593(+)
26235403-26235402(+)
26235681-26238092(-)
						
						Potential amino acid sequence
						
							MEKCRRSTHSCCIPCRLQKSILLHEVPR*(+)
MRYPGELFVDSVVDWVATSVVGLPRILYYSKETLGPEFIGKSGHHKVKVIFFSSTGERAAPFLR
QAAQEYSTYASFAFVLWKEDESQIWWNSLGVESAPSLVFLKGPGAKPIVYHGTFTKSEFTKIME
EHKHQELPQLRSDTSLELGCDARGYSRAGNDIAIWYCVIVAGRPGIELSKRRQILRKAQDQLFS
DVDASTSENVDSSVVVSSAAAALKDDRLTFVWLDGEVQKVYPLLLHTLQTAEVHPVT*(+)
MSPWNSTRYEVNQQLTLPPSQQQNPQKAHLGTSCNRMDFCSLQGMQQEWVDLLHFSIQPNKGQP
VIF*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26238125-26235593(+) 26235403-26235402(+) 26235681-26238092(-)
Potential amino acid sequence	MEKCRRSTHSCCIPCRLQKSILLHEVPR(+) MRYPGELFVDSVVDWVATSVVGLPRILYYSKETLGPEFIGKSGHHKVKVIFFSSTGERAAPFLR QAAQEYSTYASFAFVLWKEDESQIWWNSLGVESAPSLVFLKGPGAKPIVYHGTFTKSEFTKIME EHKHQELPQLRSDTSLELGCDARGYSRAGNDIAIWYCVIVAGRPGIELSKRRQILRKAQDQLFS DVDASTSENVDSSVVVSSAAAALKDDRLTFVWLDGEVQKVYPLLLHTLQTAEVHPVT(+) MSPWNSTRYEVNQQLTLPPSQQQNPQKAHLGTSCNRMDFCSLQGMQQEWVDLLHFSIQPNKGQP VIF*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0632600_circ_g.1

Address

Any questions?

Supported by