Detail information of Zm00001d039563_circ_g.1


General Information
CircRNA Name Zm00001d039563_circ_g.1
ID in PlantcircBase zma_circ_004122
Alias control_test_circ_005183
Organism Zea mays
Position chr3: 8047181-8051969  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d039563
Parent gene annotation ARM repeat superfamily protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d039563_T011:2
Zm00001d039563_T003:2
Zm00001d039563_T008:2
Zm00001d039563_T006:2
Zm00001d039563_T004:2
Zm00001d039563_T013:2
Zm00001d039563_T001:2
Zm00001d039563_T010:2
Zm00001d039563_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTTAGGTCTACTGAAAGTTCTACTTGAGGCTGCTAAACAACCATCACCTGCACGGATAGACG
GGGTGGTCTCTTTGCTGTGGCATGTCATGAAAGGAAcagcagcgttgagatatttcccgaagga
ctatgttagagaatttatggcagaatctgtttcatttttgctgaggaatgcacctaataatcag
ctaacgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCAGCGTTGAGATATTTCCCGAAGGACTATGTTAGAGAATTTATGGCAGAATCTGTTTCATT
TTTGCTGAGGAATGCACCTAATAATCAGCTAACGCAAGGTATTTTTCTTTTCTCACTTGTGTTC
TTTTACTATAGTATATTGTATATATTATGTTTCTGAAAGGTATGGATCCTTTTTGTTCTCTTCA
ACTTTTGGTGTTAGTTTCAATGATGCTTTGGAGCCACTAGCTTTCATATTTGGTCCAAAATTAA
CCTTTGTGGTATCTGGCTGTGGGCTCAACTTAAATATTATTTTTCTTGAAAATGCAGGAGAACT
GCTCCTTTTTATATATTAAGAAGAAAGGTAACAAGGTCTTAAAGAAGGCCGAAGCAAATACAAG
GCACTCTTTACGGAGGCCAAAACATGCATACAAAAAAGAGTCCATAGAATCCTGAACTGCCACT
GCTACTCCAAAGATAGCATCCCTTAGGTATCAGGCAAGGAAACTGCCAGATATGCTAGTCCCTT
GGTGTCAGGGCCTAAGGAGGCCCACGGAGGGGCTGCGGTAGCAGCAGCCATAGGCTCTCCAAGG
GGATTAGATAAGGATAGTTAGAGATAAGACTAAAAGATTAGTTGAGATTATTTAGGAGATTAGT
TGAGATTATCTAGGAAAGTTATCAGTTAGTAGTTTGTTGAGAGTTTTTAGGAGAGTTTTAATGA
GATAAGGATCTCTAGTTAGATAGGGGCAGCCAGCTGGCCTATTTATGTAATCAATGGACGAGAA
ATAAAGTAGGCAAGAATTAGAAGGGAAAAACCCTCCTCTTGCTCGGCCGTGGGCAGAGGCCCTC
GGCCGACGTTCCTGCCCATCGATACCCCTCTCCAATCCCTCACCGATCTAGCGACCATAACACT
TGGCCCCTGCAATTTCCCACATTCTCCTCTCTTCATCCTCAAGCCTAAGGATTAGAGGCAAGCT
GGGTGTCCAGTTATCAAAAACACATCTATTACGGTGTTTCCAAATCATCCAGGCCCCTAGAATG
ATGAGGGAGTCAATACCTTACCTGACAGGCCCATTCACCGCCTCTGAGACTTTTTCCCACCACT
CAAGAAAGGATGTGGCACCTGGTTGGGGCTAAAGAATGCATGCCAAACTTCCTCAACATCATGT
ACCAGAATGATCTTGCAAATACGCATGACACAAGCAAATGATTTATAGTTTCAGCTTCCTGGTC
ACATAAAGTGCATTTGCTTGGATTATTCAGACCTCTTAGCCAGTCTGCTAGCCGTCCAAGGTCC
AACACGGGCAACCAGCCAAATGAAGAATTGACATTTTGATGGGGCCCAAGATCTCCACACCCTT
CTGTAATGTCCAAAGGAGCTTGATCCCAAGAAAAGACTCTTATAAGCAACCTTTGCAGAGTATC
TTCCATCTGAAGCAAAGCTGAAAATATGCTTATCCTCTATATTGGGCTGCAGGTCAATATCTGA
GAGAGCTCCCCAAAGATGAAGATAGTCAATTAGAGCTCCAACTGTGAGAGCCCCTTTAATATCT
GAAATCCATCTCCTATTTGATAAGGCATCTTGGATAGTTCTCTTGTTACGAACTCTCTTTGGTA
TTAGGTCATACAATCGAGGTGCCAAATCAGAAATTCTTCTCCATGAAGCCACTTATCTGTCCAA
AACATGGTGTTTGCTCCATCCCCAATCTCAGAGATCAAGGCCCTGGAAAAGAAAGCCCGAGCCT
TACTAGGAACATAGATAGGTAAGCCAGACTAAGGGCGATCAAGGCCAGTTTTTTGCAACCAAAG
CCATCTCATCTTGAGAGCCCAGCAGAGCTCCTGGAGATTAGAAATACTCAATCCACCCAGCTGT
AAAGGTCGGCACACCTTTTTTTCTCGAAAGCAAGGTCGGCACACCTTTCCCCATGACACCAAAC
AGTGACCTCCTCTTGCTTCCTTTCGACCCCTCCAGAGGAAACCTCTCCTTATCTTATCAATAGC
ATCCAAGACCCATTGGGGGATGTCAACAGCCATCACTACATAGATGGTCATGCCTTGAGGACAT
GCTGCACTTGAATCCTTCTTCTTGCCGTGGTCATTAAATCAGCCTTCCTGTTTGGAAGCTGATC
ATCAACCTTTTCCACAAAAGGCTGAAAGTGTTGCCTGCTAAACTTACGTAATGATAATGGGAGC
CCTAAATAACGGCAAAGGAATGCTGCAATCCCACATGGCAGCAAGGTCTGAACCTCCAGTAAGG
TCTCCTTAGGGCACTTGATTGGAAAGATGTTGGATTTATGTGCATTATTATAAACGCCAGAAGC
ATCACCAAAGAGCTGGAGGATGTCTAGGGTCACAGAGATATCCGATGTTGTTGGATGCAAAAAT
AAGACCACGTCATCTGCGTACATAGAGATCTGTTGTAGCCTTTTTCTGCTTGATAGCTGCTGGA
GCAGACCTGCGTCCTCTGCCTTGTTGAACATAATTTCCAGAATATCCATTATAAGAATGAATAA
CATCGGGTGTAGCCTTTTTCTGCTTGATAGCTGCTGGAGCAGACCTGCGTCCTCTGCCTTGTTG
AACATAATTTCCAGAATATCCATTATAAGAATAACATCGGGAGAGAGGGTCTCCCTGCCGGAGT
CCTCTCCTATGCCTGATGTACTCTCCTGGGAACCCATTGAGTAAGGCTTGAGTTGAAGAAGAAG
CCAACAAACCACTAATTATATCTCTCCAAATCTGTCCAAAACCCATCTGCTCCATGACTTCTAT
TAGGGGAAGGGACATGAAACCGAATCAAAAGCCTTGGTTATGTCTAATTTGAACAATAACCGAG
CCAATTGTTGCTGGTGCAAGAGCCTTGAGGTTTCCAACATAAAATTGTCCTAGATAAACCTTCC
CTTTATGAAGGCACTTTGATTAGGGGAAACCATCTCGTTGAGCTTTTTGGCTATCCGGTTAGCA
AGGATCTTTGTGACCAGTTTAGCAAATCTGTGCACAAGACTAATTGGTCGAAAGTCTTTTACCT
GATCAGCCCCTTCATGTTTGCTGAAATTCCAAAACCTCCTGCTCCAGACCGCCGATGCTGCAGC
CATGACATCTTTTTTCATAATGTTCCAGCAAGCTTTGTAAAACCTACCTGTGAAGCCATCTGGC
CCTGGGGCCTTATCTGGGGTAAATCTCTAATGGTCTCCCACACTTGTTGCTCTGAAAAAGGGGT
GTCTAAATTGGCCCTGTTGTGTTTAGGTACTGCAAGGGCTTCCAAATCAATCACCCTGGTTCTA
TCTCTGCACAGACCAATGAGTTTGGAGGAATAATCATCCACAACTGCAGCTTTCTCACTATGAT
TGGTAAGGATATGATTACCATCCACTAATTTGGCTACAAAATTCTTTCTTTTACGGTGTCGGGC
ATGCAAATGAAAGAATTTTGTGTTAGCATCGCCCTCTTTGAGCCATGAAATTCTAGATCTTAAT
CTTGCCATAGTGCGCTTGAAGGAGGACAACAGCAAGGTCTGTTTCTTAAGTCTGTTCATGAGCC
ATAATTCAGCTGGGGAGAGAGATCTCTCATCTTGTGTCATCTCTAACCTGTGTAAGATTTCTTT
TGCCAATGCTAACTGTGACTTCACATGGCCAACATGTTTTTCACTCCAAGCTTGCAGCCTTTTA
GCCGTTTCCTTCAGCTTCCTTTCAAGATTCAGAAAAGGACAGTTTGCCACTTCTATAGATTCCC
AAGCTGATTGAACTAGCTCGTGAAACCCGTCAAGCTTGGTCCAGAACTGCGCCTTTGAGAGAAC
ATCTCCAACAGTGTGCTTCGGTGAACACTGTGGCGACGGCAATTTGCCTTGCCATGGTTTCACC
TTGATCCTTGAAGAGGACCTCAAATATGGAGGATACAACATGTGCCTCGGCGTTGGCCCTGGTC
CCGACCTGCAGACTCCATGGGCACTCTCACCTGCCTCCATCAACATATCTTCCCACTGCGACTT
TGACGGAGCAGAGACAACCAGGCTGTCTGCCGACTTCTCCAATCTCGGAACCAGTCCTAAGAAC
AGAGAACCGAGACCCGGAGCTTGACGGCGCTGAGCACGCACTGGTTGTAGTTCCATGTTGATTA
CTTGCCAACAGGTTCTCAGCCTCCAGTCCTCCACCGACAAAGCACGAACGACCTCCACCTCCGT
AGGTGCAAGTCTTCCGAGACGACCCTTCCTCGCATTCAAGTGTTTTTGATGATTTGCTCTCTGC
TATCCCACTTATGAGGCCCTAGGACACACATGCATTCAAGTACTAATGGATGGAGTTTTAACTG
CACAGATTGATTTTGCCTTTCCCCCCACTGGCTTCCTATCTTTTGCAACTATGCAGTGTTTTCT
GTTTGCTGAGGCAGAAACCCCTTATGCAGTGTTTTCAGTTCCATATAAAGTTGTGTTATGTAGC
TTCATCAATACTCCCTCCGTTCCAAATTGTAAGTCATTTTGGCTTTTCTAGGTACATAGCTTTT
GCTACGCACCTAGATATACATTATGTCTAGTTGCATAGCAGAAGCTATGTATCTAGAAATACCG
GAACAAGTTACAATTTGGAACGGAGGGAGTACGGGTACTAAAAAGGTTTAGGCTGAGCTACCAT
CAATGGTAGTGGGAAGCTAGGCTGTCATGCTTGTTTAAATGAGGTATCTAATTTATTTTAACTT
GCATTTTTCTTGATTGGCCCTTAGGTCTACTGAAAGTTCTACTTGAGGCTGCTAAACAACCATC
ACCTGCACGGATAGACGGGGTGGTCTCTTTGCTGTGGCATGTCATGAAAGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.049736787
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018