Plant Circular RNA Database

Detail information of AT1G52360_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G52360_circ_g.5
					
						ID in PlantcircBase
						ath_circ_006962
					
						Alias
						Ath_circ_FC0761
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 19499681-19503502  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT1G52360						
					
						Parent gene annotation
						
							Coatomer subunit beta'
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G52360_circ_g.1 AT1G52360_circ_g.2 AT1G52360_circ_g.3 AT1G52360_circ_g.4 AT1G52360_circ_g.6 AT1G52360_circ_g.7 AT1G52360_circ_g.8 AT1G52360_circ_g.9 AT1G52360_circ_g.10 AT1G52360_circ_g.11 AT1G52360_circ_g.12 AT1G52360_circ_g.13 AT1G52360_circ_g.14 AT1G52360_circ_g.15 						
					
						Support reads
						1
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G52360.1:16
AT1G52360.2:16
AT1G52360.4:16
AT1G52360.3:16

General Information
CircRNA Name	AT1G52360_circ_g.5
ID in PlantcircBase	ath_circ_006962
Alias	Ath_circ_FC0761
Organism	Arabidpsis thaliana
Position	chr1: 19499681-19503502 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	AT1G52360
Parent gene annotation	Coatomer subunit beta'
Parent gene strand	+
Alternative splicing	AT1G52360_circ_g.1 AT1G52360_circ_g.2 AT1G52360_circ_g.3 AT1G52360_circ_g.4 AT1G52360_circ_g.6 AT1G52360_circ_g.7 AT1G52360_circ_g.8 AT1G52360_circ_g.9 AT1G52360_circ_g.10 AT1G52360_circ_g.11 AT1G52360_circ_g.12 AT1G52360_circ_g.13 AT1G52360_circ_g.14 AT1G52360_circ_g.15
Support reads	1
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G52360.1:16 AT1G52360.2:16 AT1G52360.4:16 AT1G52360.3:16

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACAAAGCCAGTGA
AATCTTACCTACAATTCCTAAAGATCAGCATAACAGccgctcagactcgagatcaaggtattgt
ttcgatttccatttagtttttttgagggatttctttttatgtcattcgctctgtttttttttcg
ctgtgttg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCGCTCAGACTCGAGATCAAGGTATTGTTTCGATTTCCATTTAGTTTTTTTGAGGGATTTCTTT
TTATGTCATTCGCTCTGTTTTTTTTTCGCTGTGTTGATAATTTCTTTGCGTTGTTTTTGGTTCA
GAGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGG
TAATTTCAAGCTTTCGCTTTGCTTTCATACTTTTGTACCGTTATTTCTGCTACTAACGACTGGG
ATGGTAAAAACATTGGTTTGCAGGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGA
ACTACCAGACGCAGGTGGGTGAATTATTTTGATTTTCGTCATCTGTGTCCTTATGTATGTTACA
GTGAACAATTTGTGAAATGGGGTTACCAAAAATGCTACTGAAAGATTAATATCTTTCTGTAATT
ATGAGGTTTTGTAGTGACTTTACAGACTCTTAGGCTGTTTTTATGATTCATGGAACTTTTTCTA
ATCTGAATCTTGCTTGATAATCATCAGGTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAG
GTATACGGCTTTTGTTCTTTTGTGTCTTTTGTTATATTGTTCAAGTTTTTGTTGTATGTACTAA
GTACTCGTGTCTAGTTTGTTACTTATTCTGCTTTTTTATATTATGACTTTGCAGTTCGGTCAGC
CAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATAC
AATTACAACACCATGGACAAGGTTAAAGTGTTTGAGGCTCATTCAGACTACATTAGGTGTGTGG
CTGTTCATCCAACCCTTCCATATGTGCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGA
CTGGGAAAAGGGTTGGGCTTGCACTCAGATATTCGAGGGACACTCACACTATGTGATGCAAGTC
ACATTTAATCCAAAAGACACCAACACTTTTGCCAGTGCATCCCTTGATCGTACCATAAAGGTGC
TGAAATGGTCTAACATTGAAACATCATTATGGTTTAGTCCGCTTAGTCCGCTCATTCTACGTTT
ACATGCATGTTCATCTTCAGATTTGGAATCTTGGTTCCCCAGACCCAAATTTTACATTGGATGC
CCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACC
GGCTCTGATGATCACACTGCTAAGGTATGCCTCCTGTTCAATGGTCTTTTAGTTGATACATTTC
TACTGGACATTATGTGCTTTCAGGTTATTTACTAGTTGAATTTCGTGAATCAGGTCTGGGACTA
CCAAACAAAAAGTTGTGTACAGACCCTGGAGGGGCACACACACAATGTATCTGCAGTATGTTTC
CATCCAGAGCTTCCAATTATAATCACAGGTTCTGAAGATGGCACCGTTCGCATTTGGCATGCAA
CCACATACAGGTATTATAATATTAAACAGTTTTTTTTTGTTGGACATATTATAGTAAACGCTTC
TTGTATGCCTTGGCTAAACCATCTCCACTTTGGCTTCATTCTTGTGCACTTTTTCACCATTACC
AATTTCTTTTATTGTCCTTCCATTTGTAATCCCAATTTCCTAATGTCTGTTTTTTCTTGCAGGC
TAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACG
CCGGTGAGTTATTAGTTTTTGGCTCCCTTCTCTTATTAATAAATTGATGCTTGTCCGAACTGTT
ATCCGGGAGTTGATGTTCCCTCTCATTTGATAGTGAAATACCATTCATTGAACTTTGACGATTT
GTAAAACCTTGGATTCTTAGATTTGTTAGAAATGATATTGAGAGGTCTACCTGGTTCTAGTACT
CCATTGAGTTGTCCTGCAAAACCTTACCTTGTCCACATTCTCATTTCACAGGGTTGTGATCGGA
TATGATGAAGGAACCATCATGGTTAAACTTGGACGAGAAATTCCTGTCGCTAGCATGGACAATA
CCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACTGCAAACATCAAAAGTATTGGTGC
AGATTACGAGGTACACGCCATACTTGTAACTCTTATACTGTGGCATAGGATGACCTATTTGTTT
TTTGTTTTTCGCCTGATGATAAGTTTTTGTTCTGTAACTTAGGTTACTGATGGAGAAAGGTTGC
CCTTGAGTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAGTGAGTGTTACTACAGCACT
CGGTCCAATGATTTTATGATGTTGTGGCTTATTATATAGTTCATTTCGGAAAAACATTTTCTGC
GTTGCTGGTATGATTGGCAAGTGCCTCAAAGTTATGGGTATCGCTAAGCCGCGTCTTCAGAATA
TATATCTGTTCTCACTTGATCTGTGTCTCATATGTGGGTACTCTTGAATCTCAGAGCTTGAAGC
ACAACCCTAATGGGAGGTTTGTCGTAGTCTGTGGTGACGGAGAATATATAATCTACACGGCTTT
GGCTTGGAGAAATAGGTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGT
GCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGGTTTCTAAATCTT
TTTCTCTCTGATCTAAGCCGTTCTGTTCAACCCTGTATCTATGGTTGTTGGAAGTATTATTGAT
ACTGGTCATGGAGATAGCTATATTCGGATCTGGCTCATTCAGAAAATACATTTTCAGGAAAAGA
GGAGTATCCGCCCTACTTTTTCAGCTGAGAAGATCTTTGGAGGAACCTTGTTAGCTATGTGTTC
AAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACT
GTAAAGGTATCCCAGTTAACTTGGCTCAGTTTATTGTAAGAAGTTTACTTCAAGACATATTTGG
AATAGTGGAAACTAATATCATTGCCTTCAGTTTGAGGTTTTCCTCGTTTGTTTCTTCTCTAATT
TGTAGTGTTGCTACATAACGTTTGCAGAATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCA
TTGCTAGTGACACATCATTCTACATCTTGAAATTCAACGTGAGGATCCTGTCCAACAAACACTC
TTATGCTGTGAATTTCTATATGCGATTCATGGATTGTCCAAGTGCTAACATGGTGTTCTTGTTA
TACAGCGCGACTTAGTTACCTCACATTTTGATAGCGGAAGACCTACTGAGGAAGAAGGTGTTGA
GGATGCTTTTGAGGTTCTCCATGAAAATGATGAACGTGTTAGGACAGGTATATGGGTTGGTGAC
TGTTTCATTTACAACAACTCTTCCTGGAAGCTTAACTACTGTGTTGGAGGCGAGGTATTGTGCA
TATATGTTGGTTACTCTGATTTGGAAGTTGTTATGAACTGGATTCTAATGATGGTTGCTAACAT
CGTAATACTAGGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGC
AAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAAGTAAGTGCTTAGATTTGTGTGTTTA
TATAATTGAGATTGTTCTAGAAGTTTCTGATGCTGTTCCCCTGTTTTGTGGATGCAGTGTTATA
GGGTACACCTTGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACA
AAGCCAGTGAAATCTTACCTACAATTCCTAAAGATCAGCATAACAG
						
					

			
		

Sequences
Splice junction sequence	TGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACAAAGCCAGTGA AATCTTACCTACAATTCCTAAAGATCAGCATAACAGccgctcagactcgagatcaaggtattgt ttcgatttccatttagtttttttgagggatttctttttatgtcattcgctctgtttttttttcg ctgtgttg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCGCTCAGACTCGAGATCAAGGTATTGTTTCGATTTCCATTTAGTTTTTTTGAGGGATTTCTTT TTATGTCATTCGCTCTGTTTTTTTTTCGCTGTGTTGATAATTTCTTTGCGTTGTTTTTGGTTCA GAGAAAATTAGCGCAAAGGTCTGAGAGAGTTAAATCTGTGGATCTTCATCCTACAGAACCATGG TAATTTCAAGCTTTCGCTTTGCTTTCATACTTTTGTACCGTTATTTCTGCTACTAACGACTGGG ATGGTAAAAACATTGGTTTGCAGGATTCTTGCAAGTTTGTATTCTGGAACCTTGTGTATTTGGA ACTACCAGACGCAGGTGGGTGAATTATTTTGATTTTCGTCATCTGTGTCCTTATGTATGTTACA GTGAACAATTTGTGAAATGGGGTTACCAAAAATGCTACTGAAAGATTAATATCTTTCTGTAATT ATGAGGTTTTGTAGTGACTTTACAGACTCTTAGGCTGTTTTTATGATTCATGGAACTTTTTCTA ATCTGAATCTTGCTTGATAATCATCAGGTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAG GTATACGGCTTTTGTTCTTTTGTGTCTTTTGTTATATTGTTCAAGTTTTTGTTGTATGTACTAA GTACTCGTGTCTAGTTTGTTACTTATTCTGCTTTTTTATATTATGACTTTGCAGTTCGGTCAGC CAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATAC AATTACAACACCATGGACAAGGTTAAAGTGTTTGAGGCTCATTCAGACTACATTAGGTGTGTGG CTGTTCATCCAACCCTTCCATATGTGCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGA CTGGGAAAAGGGTTGGGCTTGCACTCAGATATTCGAGGGACACTCACACTATGTGATGCAAGTC ACATTTAATCCAAAAGACACCAACACTTTTGCCAGTGCATCCCTTGATCGTACCATAAAGGTGC TGAAATGGTCTAACATTGAAACATCATTATGGTTTAGTCCGCTTAGTCCGCTCATTCTACGTTT ACATGCATGTTCATCTTCAGATTTGGAATCTTGGTTCCCCAGACCCAAATTTTACATTGGATGC CCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACC GGCTCTGATGATCACACTGCTAAGGTATGCCTCCTGTTCAATGGTCTTTTAGTTGATACATTTC TACTGGACATTATGTGCTTTCAGGTTATTTACTAGTTGAATTTCGTGAATCAGGTCTGGGACTA CCAAACAAAAAGTTGTGTACAGACCCTGGAGGGGCACACACACAATGTATCTGCAGTATGTTTC CATCCAGAGCTTCCAATTATAATCACAGGTTCTGAAGATGGCACCGTTCGCATTTGGCATGCAA CCACATACAGGTATTATAATATTAAACAGTTTTTTTTTGTTGGACATATTATAGTAAACGCTTC TTGTATGCCTTGGCTAAACCATCTCCACTTTGGCTTCATTCTTGTGCACTTTTTCACCATTACC AATTTCTTTTATTGTCCTTCCATTTGTAATCCCAATTTCCTAATGTCTGTTTTTTCTTGCAGGC TAGAGAACACATTGAATTATGGCCTTGAGAGAGTCTGGGCAATTGGTTACATTAAAAGTTCACG CCGGTGAGTTATTAGTTTTTGGCTCCCTTCTCTTATTAATAAATTGATGCTTGTCCGAACTGTT ATCCGGGAGTTGATGTTCCCTCTCATTTGATAGTGAAATACCATTCATTGAACTTTGACGATTT GTAAAACCTTGGATTCTTAGATTTGTTAGAAATGATATTGAGAGGTCTACCTGGTTCTAGTACT CCATTGAGTTGTCCTGCAAAACCTTACCTTGTCCACATTCTCATTTCACAGGGTTGTGATCGGA TATGATGAAGGAACCATCATGGTTAAACTTGGACGAGAAATTCCTGTCGCTAGCATGGACAATA CCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACTGCAAACATCAAAAGTATTGGTGC AGATTACGAGGTACACGCCATACTTGTAACTCTTATACTGTGGCATAGGATGACCTATTTGTTT TTTGTTTTTCGCCTGATGATAAGTTTTTGTTCTGTAACTTAGGTTACTGATGGAGAAAGGTTGC CCTTGAGTGTTAAAGAGTTGGGGACCTGTGATCTTTATCCACAAGTGAGTGTTACTACAGCACT CGGTCCAATGATTTTATGATGTTGTGGCTTATTATATAGTTCATTTCGGAAAAACATTTTCTGC GTTGCTGGTATGATTGGCAAGTGCCTCAAAGTTATGGGTATCGCTAAGCCGCGTCTTCAGAATA TATATCTGTTCTCACTTGATCTGTGTCTCATATGTGGGTACTCTTGAATCTCAGAGCTTGAAGC ACAACCCTAATGGGAGGTTTGTCGTAGTCTGTGGTGACGGAGAATATATAATCTACACGGCTTT GGCTTGGAGAAATAGGTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGT GCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGGTTTCTAAATCTT TTTCTCTCTGATCTAAGCCGTTCTGTTCAACCCTGTATCTATGGTTGTTGGAAGTATTATTGAT ACTGGTCATGGAGATAGCTATATTCGGATCTGGCTCATTCAGAAAATACATTTTCAGGAAAAGA GGAGTATCCGCCCTACTTTTTCAGCTGAGAAGATCTTTGGAGGAACCTTGTTAGCTATGTGTTC AAGTGATTTCATCTGCTTTTATGATTGGGCTGAATGTAGGCTGATTCAACGTATTGACGTCACT GTAAAGGTATCCCAGTTAACTTGGCTCAGTTTATTGTAAGAAGTTTACTTCAAGACATATTTGG AATAGTGGAAACTAATATCATTGCCTTCAGTTTGAGGTTTTCCTCGTTTGTTTCTTCTCTAATT TGTAGTGTTGCTACATAACGTTTGCAGAATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCA TTGCTAGTGACACATCATTCTACATCTTGAAATTCAACGTGAGGATCCTGTCCAACAAACACTC TTATGCTGTGAATTTCTATATGCGATTCATGGATTGTCCAAGTGCTAACATGGTGTTCTTGTTA TACAGCGCGACTTAGTTACCTCACATTTTGATAGCGGAAGACCTACTGAGGAAGAAGGTGTTGA GGATGCTTTTGAGGTTCTCCATGAAAATGATGAACGTGTTAGGACAGGTATATGGGTTGGTGAC TGTTTCATTTACAACAACTCTTCCTGGAAGCTTAACTACTGTGTTGGAGGCGAGGTATTGTGCA TATATGTTGGTTACTCTGATTTGGAAGTTGTTATGAACTGGATTCTAATGATGGTTGCTAACAT CGTAATACTAGGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGC AAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAAGTAAGTGCTTAGATTTGTGTGTTTA TATAATTGAGATTGTTCTAGAAGTTTCTGATGCTGTTCCCCTGTTTTGTGGATGCAGTGTTATA GGGTACACCTTGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACA AAGCCAGTGAAATCTTACCTACAATTCCTAAAGATCAGCATAACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.200920923

Conservation Information
Conserved circRNAs	NA
PMCS	0.200920923

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT1G52360_circ_g.5

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